Expertise

Hub members Have many expertise, covering most of the fields in bioinformatics and biostatistics. You'll find below a non-exhaustive list of these expertise

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Searched keyword : Comparative metagenomics

Related people (4)

Amine GHOZLANE

Group : SINGLE - Detached : Biomics

After a PhD in informatics on graph analysis (metabolic networks and sRNA-mRNA interaction graphs) at the LaBRI (Université de Bordeaux), I joined the DSIMB team (INTS) for a post-doc on structural modeling. Then, I performed a second post-doc at Metagenopolis – INRA Jouy-en-Josas, where I was initiated to the analysis of metagenomic data. I was recruited at the HUB in 2015, and since I pursue the development of methods dedicated to the treatment of metagenomic data by combining either the treatment of sequencing data, the statistics, the protein structural modeling and the graph analysis.

Keywords
Algorithmics Clustering Genome assembly Genomics Metabolomics Modeling Non coding RNA Sequence analysis Structural bioinformatics Targeted metagenomics Database Genome analysis Biostatistics Program development Scientific computing Databases and ontologies Exploratory data analysis Data and text mining Illumina HiSeq Comparative metagenomics Read mapping Illumina MiSeq Sequence homology analysis Gene prediction Multidimensional data analysis Sequencing Shotgun metagenomics
Organisms

Projects (23)

Hanna JULIENNE

Group : DETACHED - Detached : Statistical Genetics

I am seeking to apply my knowledge in computer science and statistics to understand real world data. I have interdisciplinary background spanning complex systems, Big Data, machine learning, biostatistics and genomics. I have completed a PhD in which I applied clustering and PCA to epigenomics data and discovered new insights on the coupling between replication and epigenetics. I worked at Dataiku, a dynamic start up in which I was actively engaged to help their clients to build their Big Data strategy and draw value from their data. I studied the human microbiota during two years at MetaGenoPolis (MGP), an innovative research center. We aim at improving human health by developing strategies (eg. nutritional, therapeutical, preventive…) to restore dysbiosed microbiota with our industrial and academical partners. I currently work in the statistical genetics group at the Pasteur Institut where I apply my software development and data science skills to quantify the impact of the human genome variation on diverse health parameters.

Keywords
Clustering Data management Genomics Genome analysis Exploratory data analysis Genetics Comparative metagenomics Dimensional reduction Multidimensional data analysis
Organisms

Projects (2)

Pierre LECHAT

Group : ALPS - Hub Core

I have been involved in genomic projects for prokaryotic and human genetic studies (GWAS) since 1998. Currently, I am working on novel visualization techniques to explore large and highly complex data sets. I have develop a web based graphical user interface, called SynTView (http://genopole.pasteur.fr/SynTView/) to visualize biological features in comparative genomic studies. The tool allows interactive visualization of microbial genomes to investigate massive amounts of information efficiently. The software is characterized by the presentation of synthetic organisations of microbial genomes and the visualization of polymorphism data. I am extending this work into designing novel dynamic views for comparative analysis of viruses in emerging disease.

Keywords
Data Visualization Database Sofware development and engineering Comparative metagenomics Orthology and paralogy analysis
Organisms

Projects (20)

Nicolas MAILLET

Group : ALPS - Embedded : Structural Virology

After a PhD in bioinformatics at Inria/IRISA, Université de Rennes 1, Rennes (France), under the supervision of Dominique Lavenier and Pierre Peterlongo, I did a postdoc in bioinformatics at Laboratory of Ecology and Evolution of Plankton in Stazione Zoologica Anton Dohrn of Naples, Italy. Both my thesis and my postdoc were about the Tara Oceans projet and the development of new software to analyze huge quantities of raw reads coming from metagenomics sample. I am currently occupying a research engineer position at the Hub as leader of ALPS group and focus on several different computing problems including metagenomics, protein assembly and several short term developments.

Keywords
Algorithmics Data management Proteomics Database Program development Scientific computing Sofware development and engineering Comparative metagenomics
Organisms

Projects (8)

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