Expertise

Hub members Have many expertise, covering most of the fields in bioinformatics and biostatistics. You'll find below a non-exhaustive list of these expertise

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Searched keyword : Gene prediction

Related people (3)

Emna ACHOURI

Group : DETACHED - Hub Core

Emna has joined the C3BI in 2016 and worked actively in the IGDA platform doing research and education. Now, she is also part of the Viral Populations and Pathogenesis Unit (PVP).

Keywords
Genome assembly Sequence analysis Program development Data integration Read mapping LIMS Parallel computing Gene prediction Shotgun metagenomics
Organisms

Projects (1)

Détection et assemblage d’entérovirus dans des échantillons cliniques et environnementaux(Maël BESSAUD - Biology of Enteric Viruses) - Closed

Amine GHOZLANE

Group : SINGLE - Hub Core

After a PhD in informatics on graph analysis (metabolic networks and sRNA-mRNA interaction graphs) at the LaBRI (Université de Bordeaux), I joined the DSIMB team (INTS) for a post-doc on structural modeling. Then, I performed a second post-doc at Metagenopolis – INRA Jouy-en-Josas, where I was initiated to the analysis of metagenomic data. I was recruited at the HUB in 2015, and since I pursue the development of methods dedicated to the treatment of metagenomic data by combining either the treatment of sequencing data, the statistics, the protein structural modeling and the graph analysis.

Keywords
Algorithmics Clustering Genome assembly Genomics Metabolomics Modeling Non coding RNA Sequence analysis Structural bioinformatics Targeted metagenomics Database Genome analysis Biostatistics Program development Scientific computing Databases and ontologies Exploratory data analysis Data and text mining Illumina HiSeq Comparative metagenomics Read mapping Illumina MiSeq Sequence homology analysis Gene prediction Multidimensional data analysis Sequencing Shotgun metagenomics
Organisms

Projects (28)

Damien MORNICO

Group : SysBio - Hub Core

Graduated in “Structural Genomics and Bioinformatics”, I mainly worked during almost 6 years at the Genoscope (CEA) in the LABGeM team, within the microbial annotation platform MicroScope. I specifically focused on functional annotation and microbial metabolic pathways prediction and reconstruction, through pipeline implementation, database modeling and web interface development. Broadly, interactions in the MicroScope platform allowed me to tackle the whole annotation process: from genome assembly and gene prediction to network reconstruction. I also performed several comparative genomics analyses. As a member of the “Hub team”, I now take part to various projects, linked to HTS data, on different subjects (lncRNAs and stem cells, HIV integration and DNA structure, Ribosomal protein genes and genome evolution, Natural Antisense Transcripts in compact genomes…).

Keywords
Data management Genomics Sequence analysis Web development Database Genome analysis Databases and ontologies Orthology and paralogy analysis Read mapping Sequence homology analysis Gene prediction
Organisms

Projects (17)

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