Expertise
Hub members Have many expertise, covering most of the fields in bioinformatics and biostatistics. You'll find below a non-exhaustive list of these expertise
Search by keywords | Search by organisms
Searched keyword : Taxonomy
Related people (1)

Alexis CRISCUOLO
| work as a research engineer in the ßioinƒormatics and ßiostatistics HUß of the |nstitut Pasteur. Holder of a PhD in bioinƒormatics, my main interest is on ƒast but robust phylogenetic inƒerence algorithms and methods ƒrom large genome-scaled datasets. |n consequence, | am oƒten involved in related bioinƒormatics projects, such as perƒorming de novo or ab initio genome assemblies, designing and processing core genome †yping schemes, building and analysing phylogenomics datasets, or implementing and distributing novel tools and methods.
KeywordsAlgorithmicsClusteringGenome assemblyGenomicsGenotypingPhylogeneticsTaxonomyGenome analysisProgram developmentEvolutionSequence homology analysis
Organisms
Projects (26)
- Neonatal acquisition of ESBL-PE in the community of a Low-Income Country(bich-tram HUYNH - Other) - Pending
- Genomic study of the Pseudoalteromonas genus(Olivier CHESNEAU - Collection of the Institut Pasteur (CIP)) - Pending
- Comparative genomics analysis of cyclic-di-GMP metabolism across the Leptospira genus(Roman THIBEAUX - Leptospirosis,Other) - In Progress
Related projects (5)
Whole-genome sequencing of microbial agents for disease surveillance, outbreak investigation, epidemiology and population biology
Project organismBacteria
Manager
Operator
Project status : Closed
Analyse de séquence 16S
Project keywordTaxonomy
Project organismsBacteriaEscherichia coli
Operator
Project status : Closed
Updating the Topo IB gene tree
Project organismsNon applicableVirus
Manager
Operator
Project status : Closed
Pasteur International Bioresources Network (PIBnet) bioinformatics: whole-genome sequencing of microbial agents for disease surveillance, outbreak investigation, epidemiology and population biology
Project organismBacteria
Manager
Operators
Project status : In Progress
Development of a bioinformatics workflow dedicated to the analysis of the viral metagenome: from NGS raw data to the identification of novel viruses
Project keywordsTaxonomyShotgun metagenomics
Manager
Operators
Project status : Closed