Expertise
Hub members Have many expertise, covering most of the fields in bioinformatics and biostatistics. You'll find below a non-exhaustive list of these expertise
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Searched keyword : Tool Development
Related people (2)

Violaine SAINT-ANDRÉ
After graduating from Paris VI University with a PhD in Genetics on the “Role of histone protein post-translational modifications in splicing regulation” that I performed in the Epigenetic Regulation unit at the Institut Pasteur, I carried out two post-doctoral experiences. I first worked for three years as a postdoctoral associate of the Whitehead Institute for Biomedical Research/MIT in Cambridge (USA). My main project consisted in the integration of genomic and epigenomic data in order to predict the transcription factors that are potentially at the core of the regulation of the cell-type specific gene expression programs. I then joined the Institut Curie where I deepened my experience in multi-omics data analyses and integration to identify non-coding RNAs involved in cancer progression. I have recently joined the HUB-C3BI of the Institut Pasteur where I am performing high-throughput data integration to better understand biological complexity and contribute to precision medicine development.
KeywordsATAC-seqChIP-seqEpigenomicsNon coding RNAPathway AnalysisRNA-seqSingle CellSystems BiologyTool DevelopmentTranscriptomicsData integrationGraph theory and analysisCell biology and developmental biology
Organisms
Human
Projects (1)

Anna ZHUKOVA
A computer scientist by training, I am applying this knowledge to solve biological problems and am particularly interested in modelling of biological systems, knowledge inference, ontologies and data visualisation.
KeywordsAlgorithmicsData VisualizationMetabolomicsModelingPathway AnalysisPhylogeneticsSystems BiologyTool DevelopmentDatabaseProgram developmentScientific computingDatabases and ontologiesApplication of mathematics in sciencesSofware development and engineeringData and text miningEvolutionData integrationGraph theory and analysisWorkflow and pipeline developmentDiscrete and numerical optimization
Organisms
VirusHuman Immunodeficiency virus (HIV)
Projects (6)
- Modeling mitochondrial metabolism dormant Cryptococcus neoformans(Benjamin HOMMEL - Molecular Mycology) - Closed
- Measles virus protein C interplay with cellular apoptotic pathways; applications for cancer treatment(Alice MEIGNIÉ - Viral Genomics and Vaccination) - Closed
- Diffusion des mutations de résistance du VIH : modèles et méthodes d’estimation(Olivier GASCUEL - Evolutionary Bioinformatics) - Closed
Related projects (35)
Candida albicans population genomics
MacSyFinder development: models data structure
Systems Biology Data Management and Analysis Platform (SYSMAP)
Mapping of research themes and fields of expertise available in the Institut Pasteur international Network
Fast and accurate implementation of the raw read coverage homogenization technique
Whole-genome sequencing of microbial agents for disease surveillance, outbreak investigation, epidemiology and population biology
Interactive web interfaces and Analysis Tools of Bacterial NGS data for Postgenomics Life Scientist
Characterization of an unusual Leishmania major HSP70-related protein
a web interface for MacSyFinder (a tool to detect macromolecular systems in genomes).
INNOV DIAG HPV
A program to identify integrons, attC sites and gene cassettes
A reference panel of dengue vector genomes
Pasteur International Bioresources Network (PIBnet) bioinformatics: whole-genome sequencing of microbial agents for disease surveillance, outbreak investigation, epidemiology and population biology
Un workflow pour l'analyses des polymorphismes des souches de grippe saisonnier.
A long-term mission for an assigned CIH-embedded bioinformatician to provide bioinformatic support to the CIH community
Antibody sequencing by MS: Automation of analysis
Listeriomics - Development of a web platform for visualization and analysis of Listeria omics data
Identification of new or unexpected pathogens, including viruses, bacteria, fungi and parasites associated with acute or progressive diseases
Development of top-down proteomics for clinical microbiology
Add unit tests to IntegronFinder
A novel MacSyFinder module for detection of bacterial capsule systems on the future Galaxy platform.
JASS: an online tool for the joint analysis of GWAS summary statistics
- Vincent GUILLEMOT
- Hanna JULIENNE
- Pierre LECHAT + 1 operator