Alexis CRISCUOLO

| work as a research engineer in the ßioinƒormatics and ßiostatistics HUß of the |nstitut Pasteur. Holder of a PhD in bioinƒormatics, my main interest is on ƒast but robust phylogenetic inƒerence algorithms and methods ƒrom large genome-scaled datasets. |n consequence, | am oƒten involved in related bioinƒormatics projects, such as perƒorming de novo or ab initio genome assemblies, designing and processing core genome †yping schemes, building and analysing phylogenomics datasets, or implementing and distributing novel tools and methods.

• #19119 : Comparative genomics analysis of cyclic-di-GMP metabolism across the Leptospira genus (Roman THIBEAUX - Leptospirosis,Other) - In Progress
• #17976 : Fast and accurate identification of the medoid of a set of genomes (Olivier CHESNEAU - Collection of the Institut Pasteur (CIP)) - Awaiting Publication
• #17896 : Quick phage data mining (Quentin LAMY-BESNIER - Bacteriophage, Bacterium, Host) - Closed
• #14337 : Long-term preservation of a Campylobacter fetus strain and genomic stability (Dominique CLERMONT - Collection of the Institut Pasteur (CIP)) - Closed
• #13699 : DNMT and RNMT in Leishmania (Gerald SPAETH - Molecular Parasitology and Signaling) - In Progress
• #12920 : Séquençage à haut débit (NGS) et traitement de séquences ADN des domaines variables d’anticorps simple chaine d’alpaga (domaines VHH ou Nanobodies®) (Margarida GOMES - Antibody Engineering) - In Progress
• #12068 : Antimalarial drug resistance in Africa: A comprehensive molecular analysis of the emergence of artemisinin resistant parasites in Africa (Didier MENARD - Biology of Host-parasite Interactions) - Closed
• #11805 : Implémentation d’un algorithme rapide de génotypage cgMLST (Valérie BOUCHEZ - Molecular Prevention and Therapy of Human Diseases) - Closed
• #8521 : Relationships between ESBL-producing Escherichia coli from food and healthy mothers in Phnom Penh, Cambodia (Maya NADIMPALLI - Pharmacopepidemiology and Infectious Diseases) - Closed
• #8130 : Genomic analysis of catheter-related Escherichia coli infection (Christophe BELOIN - Genetics of Biofilms) - Closed
• #8117 : Histone Methyltransferase and Demethylase in Leishmania (Suzanne LAMOTTE - Molecular Parasitology and Signaling) - Closed
• #7283 : Detection of virulence Genes and genes of interest in Bacillus cereus (Dominique CLERMONT - Department of Microbiology) - Closed
• #6579 : Novel protein interaction in the assembly of photosynthetic prokaryotic complexes (Galyna KUFRYK - Biochemistry of Macromolecular Interactions) - Pending
• #4336 : Comparative genomic and phylogenetic analysis of Clostridium baratii strains (Christelle MAZUET - Anaerobe Bacteria and Toxins) - Closed
• #2922 : Comparative genomic and phylogenetic analysis of 14 Clostridium tetani strains (Diana CHAPETON MONTES - Anaerobe Bacteria and Toxins) - Closed
• #2827 : N/A (Najma RACHIDI - Molecular Parasitology and Signaling) - Closed
• #2760 : Pasteur International Bioresources Network (PIBnet) bioinformatics: whole-genome sequencing of microbial agents for disease surveillance, outbreak investigation, epidemiology and population biology (Sylvain BRISSE - Microbial Evolutionary Genomics) - In Progress
• #2741 : A reference panel of dengue vector genomes (Louis LAMBRECHTS - Insect-Virus Interactions) - Closed
• #2598 : Updating the Topo IB gene tree (Patrick FORTERRE - Molecular Biology of Gene in Extremophiles) - Closed
• #2525 : Characterization of an unusual Leishmania major HSP70-related protein (Gerald SPAETH - Molecular Parasitology and Signaling) - Closed
• #2497 : Methods to identify and characterize orthologs of genes encoding small proteins (Françoise NOREL - Macromolecular Systems and Signaling) - Closed
• #2417 : Whole-genome sequencing of microbial agents for disease surveillance, outbreak investigation, epidemiology and population biology (Sylvain BRISSE - Microbial Evolutionary Genomics) - Closed
• #2249 : Phylogenetic analysis of the Leishmania HSP70 protein family (Gerald SPAETH - Molecular Parasitology and Signaling) - Closed
• #2178 : Evolutionary relationships between giant viruses and eukaryotes (Patrick FORTERRE - Molecular Biology of Gene in Extremophiles) - Closed