Hugo VARET

Hugo Varet is a biostatistician engineer from the Ensai (Ecole Nationale de la Statistique et de l’Analyse de l’Information) and has been recruited in 2013 by the Transcriptome & Epigenome Platform of the Biomics Pole. Late 2014 he obtained a permanent position at the Bioinformatics & Biostatistics Hub and has been detached to the platform to continue the statistical analyses of RNA-Seq data and develop R pipelines and Shiny applications that help in this task. One of them is named SARTools and is available on GitHub: https://github.com/PF2-pasteur-fr/SARTools. In December 2019 he left the Biomics Platform and joined the Bioinformatics & Biostatistics Hub as a core-member.

• #15011 : Collaboration between CETEA, C2RA and Hub for optimization of experimental designs (3R) (Myriam MATTEI - Center for Animal Resources and Research) - In Progress
• #14967 : Transcriptional regulation of bacterial physiology during host-pathogen interaction (Arnaud FIRON - Biology of Gram-Positive Pathogens) - In Progress
• #14680 : Modulation of cellular pathways involved in neuropathology of rabies infection (Florence LARROUS - Lyssavirus Dynamics and Host Adaptation) - In Progress
• #14667 : improvement of new methodology for oral infection on mice (ANNE DERBISE - Yersinia) - Closed
• #14611 : Deciphering the transcriptome profil during rabies infection in brain in mouse and in human (Laurent DACHEUX - Lyssavirus Dynamics and Host Adaptation) - In Progress
• #14608 : Integration and advanced statistical analyses of complex datasets for host factor identification involved in Salmonella and Shigella intracellular niche formation (Jost ENNINGA - Dynamics of Host-Pathogen Interactions) - Pending
• #13376 : Antiviral activities of anti-HIV-1 antibodies (Timothée BRUEL - Virus and Immunity) - Closed
• #11642 : Defining Shigella-targeting of human lamina propria mononuclear cells using CyTOF technology (Katja BRUNNER - Molecular Microbial Pathogenesis) - Closed
• #11514 : Exploring immunological mechanisms of human graft-verus-host disease after hematopoietic stem cell transplantation (Eleonora LATIS - Immunoregulation) - Closed
• #8727 : Functional interactions between HP1 proteins and RNA. (Christophe RACHEZ - Epigenetic Regulation) - Closed
• #8263 : Performing Gene Ontology Analysis on RNAseq data in Aedes aegypti (Sarah MERKLING - Insect-Virus Interactions) - Awaiting Publication
• #8202 : Transcriptomic analysis of blood cells from ebola infected patients (Stéphanie REYNARD - Biology of Viral Emerging Infections) - Closed
• #7277 : optimisation d\'un programme sous R (Pierre-Henri COMMERE - Other) - Closed
• #6272 : Host gene regulation in response to Listeria monocytogenes infection (DAVID RIBET - Bacteria-Cell Interactions) - Closed
• #4173 : Gene Expression analysis (DULAUROY SOPHIE - Microenvironment and Immunity) - Closed
• #3905 : Development and use of statistical programs to analyze RNA-Seq data produced at the Transcriptome & Epigenome Platform (Jean-Yves COPPÉE - Transcriptome and EpiGenome) - Closed
• #3883 : Development and use of statistical programs to analyze RNA-Seq data produced at the Transcriptome & Epigenome Platform (Jean-Yves COPPÉE - Transcriptome and EpiGenome) - Closed
• #3254 : ANALYSIS OF TRANSCRIPTIONAL MODULATIONS RELATED TO CELL DEATH PROCESSES IN MURINE BONE-MARROW DERIVED MACROPHAGES AND DENDRITIC CELLS INFECTED BY LEISHMANIA AMAZONENSIS (Hervé LECOEUR - Molecular Parasitology and Signaling) - Closed
• #2622 : MicrocystOmics (Claire PANCRACE - Collection of Cyanobacteria) - Closed
• #2526 : Analyse de données de microarray (Yu WEI - Hepacivirus and Innate Immunity) - Closed
• #2263 : HIghthroughput CRISPR-Cas9 screen in bacteria (David BIKARD - Synthetic Biology) - Closed
• #2243 : Characterisation of skeletal muscle stem cell properties in distinct physiological states (Francesca PALA - Stem Cells And Development) - Closed
• #244 : Mapping the cell surface signature of the developing mouse heart (Mariana VALENTE - Lymphopoiesis) - Closed