Varun KHANNA

2015 – . – Institut Pasteur, Paris, France – Unit : Bioinformatics and Biostatistics HUB 2012 – 2015 – Institut Pasteur, Paris, France – Unit : Molecular Genetics of Yeasts Supervisor : Prof. B. Dujon 2012 – Institut Pasteur, Paris, France – Unit : Integrated Mycobacterial Pathogenomics Supervisor: Dr. R. Brosch Education 2012– MSc. Bioinformatics – Université Paris Diderot (Paris VII)

• #10841 : Duplications in bacteriophage genomes. (Luisa DE SORDI - Molecular Biology of Gene in Extremophiles) - New
• #10315 : De novo sequencing and analysis of three unassigned species of non tuberculous mycobacteria. (RIM GHARBI - Integrated Mycobacterial Pathogenomics) - Awaiting Publication
• #7631 : Differentiation of Shigella species from Escherichia coli by MALDI-TOF mass spectrometry (Sophie LEFÈVRE - Enteric Bacterial Pathogens) - In Progress
• #6818 : Identification of genes involved in the attenuation of virulence of rough M. abscessus Tn5 mutants in zebrafish (Alexandre PAWLIK - Integrated Mycobacterial Pathogenomics) - Closed
• #6783 : Tac4, a new RNA helicase involved in translation control? (Micheline FROMONT-RACINE - Genetics of Macromolecular Interactions) - In Progress
• #6701 : Identification of Tac4 mRNA targets (Micheline FROMONT-RACINE - Genetics of Macromolecular Interactions) - In Progress
• #6535 : Dissecting the peptidoglycan trafficking machinery using gene trap mutagenesis in near-haploid human cells (Christiane BRENNER - Biology and Genetics of Bacterial Cell Wall) - Closed
• #6040 : Deconvolution of synthetic chromosomes in 3D (Romain KOSZUL - Spatial Regulation of Genomes) - Pending
• #5310 : Patho-evolution of mycobacterial strains (Eva BORITSCH - Integrated Mycobacterial Pathogenomics) - Awaiting Publication
• #3936 : mechanism of toxin production by Klesiella pneumoniae (REGIS TOURNEBIZE - Imagopole) - Awaiting Publication
• #3312 : Determination of SNPs in 6 genomes of Leptospira kirschneri serovar grippotyphosa (Perrine HUGON - Biology of Spirochetes ) - In Progress
• #3103 : Massive amplification at an unselected locus accompanies complex chromosomal rearrangements in yeast (Bernard DUJON - Molecular Genetics of Yeast ) - Closed
• #2904 : Variant detection on NGS data (Laurent DEBARBIEUX - Molecular Biology of Gene in Extremophiles) - Closed
• #2850 : Horizontal gene transfer in mycobacteria (Eva BORITSCH - Integrated Mycobacterial Pathogenomics) - Closed
• #2829 : Yeast comparative genomics (Bernard DUJON - Molecular Genetics of Yeast) - Awaiting Publication
• #2741 : A reference panel of dengue vector genomes (Louis LAMBRECHTS - Insect-Virus Interactions) - Closed
• #2720 : How ribosomal protein gene position impacts in the genome evolution during a long term evolution experiment. (Alfonso SOLER - Bacterial Genome Plasticity) - Pending
• #2596 : Assemblage de novo d'une souche d'E. coli (Laurent DEBARBIEUX - Molecular Biology of Gene in Extremophiles) - Closed
• #2535 : Influence of chromatin dynamics on genomic stability during replication (Luciana LAZAR STEFANITA - Spatial Regulation of Genomes) - Closed
• #2484 : Genomic analyses of E. coli strains (Aimee WESSEL - Genetics of Biofilms) - In Progress
• #2286 : viral evolution around Ebola Treatment Centre in Macenta and according to disease outcomes (Caroline PICARD - Biology of Viral Emerging Infections) - Closed
• #2263 : HIghthroughput CRISPR-Cas9 screen in bacteria (David BIKARD - Synthetic Biology) - Closed
• #2240 : search for transcrition factors upregulating Tgfb1 expression in FHL2-/- cells (Yu WEI - Hepacivirus and Innate Immunity) - Closed
• #1320 : An automatic pipeline to call SNPs from RNA-seq reads (Vincent RAQUIN - Insect-Virus Interactions) - Awaiting Publication