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ID | Project Title | Applicant | Topics | Type | Status | Department |
---|---|---|---|---|---|---|
Evolution towards bipartite genome - core genes distribution in unichromosomal and bichromosomal Paracoccus species | J. Czarnecki | New | Department of Genome & Genetics | |||
Red Cross health workers and the continuity of care in the COVID-19 pandemic: A mixed methods operational approach | L. Heyerdahl | New | ||||
The mode of replication of repABC replicons (Alphaproteobacteria) | J. Czarnecki | New | Department of Genome & Genetics | |||
Etude de la réponse immunitaire néonatale dans la coqueluche maligne : approche transcriptomique | S. Matczak | Statistics | Short | Pending | ||
Detection of newly produced NIRVS in mosquito persistently infected cells | A. FAILLOUX | Genomics | Pending | Department of Virology | ||
User experience design for Oncodash | D. Johann | New | Department of Genome & Genetics | |||
Evaluation of a novel mouse model for Primary Antibody Deficiency (PAD) | L. Hunault | Targeted metagenomics | Coaching | In Progress | Department of Immunology | |
Understanding the mode of action of epigenetic inhibitors active against Plasmodium falciparum | I. Dobrescu | Variant analysis | Medium | Pending | Department of Parasites and Insect Vectors | |
Deciphering mutation signatures on hepatitis B virus genome | P. Pineau | New | Department of Cell Biology & Infection | |||
Comparative genomics analysis of cyclic-di-GMP metabolism across the Leptospira genus | R. Thibeaux | Comparative GenomicsOrthology and paralogy analysisPhylogeneticsSequence homology analysis | Short | In Progress | ||
Exploring pathogenic mechanisms of chronic inflammatory disease: unresolved issues in IL-23/IL-17 biology | Y. Hanane | Transcriptomics | Short | Pending | Department of Immunology | |
Research of homopolymers in the integron integrase genes | C. Loot | Genomics | Short | In Progress | Department of Genome & Genetics | |
FLAVIMMUNITY | G. Barba Spaeth | Differential analysis | Short | Pending | Department of Virology | |
Modelization of the timing of abscission | A. Echard | Applied mathematics | Medium | In Progress | Department of Cell Biology & Infection | |
fliC locus of Y. pestis | M. CARLONI | Sequence analysisTranscriptomics | In Progress | Department of Microbiology | ||
Better characterization of long chimeric virus-human reads after target enrichment on integrated viral genomes. | B. Nicolas | New | Other | |||
Genetic diversity of arbovirus populations in Aedes aegypti mosquitoes from Colombia | A. FAILLOUX | Data VisualizationVariant analysis | Medium | Pending | Department of Virology | |
Genetic diversity of yellow fever virus populations in mosquitoes | A. FAILLOUX | Data VisualizationVariant analysis | Medium | Pending | Department of Virology | |
Fast and accurate identification of the medoid of a set of genomes | O. CHESNEAU | Applied mathematicsComparative GenomicsStatistical inferenceTool Development | Short | Awaiting Publication | ||
Identification of non-coding RNAs regulated by oxidants in pathogenic Leptospira | N. BENAROUDJ | New | Department of Microbiology | |||
Evaluation in cellulo of the impact of insecticide usage on arbovirus population | V. Thomas | RNA-seq | Short | In Progress | Department of Virology | |
Measles virus type 1 infection disturbs the mitochondrial network leading to type I interferon production through the RNA polymerase III/RIG-I pathway | J. VARTANIAN | AnnotationTranscriptomics | Medium | Pending | Department of Virology | |
Analysis of the molecular pathways induced by the activation of the Nod2 receptor by MDP in hypothalamic neurons | I. Gabanyi | Pathway AnalysisRNA-seqStatisticsTranscriptomics | Short | Pending | Department of Neuroscience | |
Viral metagenomic in noctule bats from East Europe | L. Dacheux | Genomics | Medium | In Progress | Department of Infection & Epidemiology | |
Viral metagenomic in Chinese bats and their associated ectoparasites. | L. Dacheux | WGS metagenomics | Short | In Progress | Department of Infection & Epidemiology | |
PacBio sequencing analysis of DM1 cells | G. RICHARD | Genomics | Pending | Department of Genome & Genetics | ||
Effect of Chlamydia trachomatis infection on histone methylation and consequences | A. Subtil | Biostatistics | Short | Pending | Department of Cell Biology & Infection | |
Quick phage data mining | Q. Lamy-Besnier | Program developmentSequence analysis | Short | Closed | ||
Identification of factors influencing the activity of bacteriophage within the gut of mammals | D. Conti | Differential analysisHost-pathogen interactionsTranscriptomics | Medium | In Progress | Other | |
Monitoring tool for scientist who have received MAASCC career guidance | M. Guessoum | User centered design | Short | Pending | Other | |
Study of the role of cyclic dimeric guanosine mono-phosphate (c-di-GMP) in the regulation of virulence and biofilm formation in Leptospira interrogans | G. Davignon | Functional AnalysisFunctional Annotation | Pending | Other | ||
Codon Usage Bias Analysis in Vibrio | M. KENNEDY-VAL | Genome analysis | Medium | In Progress | Department of Genome & Genetics | |
Support technique - Cours de Phylogenie | C. DAUGA | Tool Development | Short | Closed | Department of Virology | |
A genome-wide RNAi screening for mitochondrial fission factors | E. Rivière | BiostatisticsClustering | Medium | Closed | ||
Estimation of the impact of differential apoptotic rate on local clone size | R. Levayer | Application of mathematics in sciences | Medium | In Progress | ||
Comparative analysis of choanoflagellate proteomic data | T. Brunet | Functional AnalysisOrthology and paralogy analysis | Short | Closed | Other | |
Gene conversion and allelic selection drives L. donovani genomic adaptation in experimental Sand fly infection | G. Spaeth | Comparative metagenomicsEvolutionGenome analysis | Medium | In Progress | Department of Parasites and Insect Vectors | |
Centrosome and basal body function in human parasites | P. Bastin | PhylogeneticsSequence analysis | Short | New | Department of Parasites and Insect Vectors | |
Early life imprinting of the immune system by the gut microbiota | A. Choi | Single Cell | Medium | Pending | Department of Immunology | |
HKA: systemic analysis of two-component signalling | A. FIRON | Differential analysisRNA-seqStatistical experiment designTranscriptomics | Short | In Progress | Department of Microbiology | |
CORSER-4 Cohort Study: Assessment of the humoral immune response to COVID-19 vaccination in each subpopulation defined by type of vaccination regimen, at 1-3-6-12-24 months | B. Marie-Charlotte | Biostatistics | Medium | In Progress | Centers | |
An online database of RNA-small molecules complexes for rational drug design | M. Bonomi | DatabaseStructural bioinformaticsWeb development | Medium | Pending | Department of Structural Biology & Chemistry | |
Clinical and biological characterisation of auto-antibodies to the nicotinic receptors in major psychiatric disorder patient | e. darrau | BiostatisticsClusteringExploratory data analysis | Medium | In Progress | ||
Regulation of IL23R expression | E. Bianchi | ATAC-seq | In Progress | Department of Immunology | ||
Role of the histone demethylase Kdm6b in ILC2 maturation and functional activation | E. Bourayou | ATAC-seqChIP-seqSingle Cell | Pending | |||
Characterization of a broad spectrum chemical inhibitor targeting the endocytic pathway to prevent bacterial intoxications. | E. Paillares | BiostatisticsDatabases and ontologiesFunctional AnalysisPathway Analysis | Short | In Progress | ||
The LeiSHield-MATI consortium: Investigating genomic adaptation of Leishmania parasites in endemic areas | G. Spaeth | Comparative GenomicsEvolutionGenome analysisGenome rearrangementsGenomics | Medium | In Progress | Department of Parasites and Insect Vectors | |
Mechanisms defining functional heterogeneity of anatomically distinct myogenic populations: insights from single nuclei-ATAC-seq data | G. Comai | Single Cell | In Progress | |||
ISV detection in mosquito cell lines | A. Blisnick | RNA-seq | In Progress | Department of Virology | ||
Modification and reliance of Chlamydia trachomatis on host cell metabolism | A. Subtil | Biostatistics | Short | Awaiting Publication | Department of Cell Biology & Infection | |
Mosquito vector competence for Zika virus | A. FAILLOUX | Data Visualization | Pending | Department of Virology | ||
Analysis of the viral diversity of coronaviruses in field samples. | B. Nicolas | Genomics | In Progress | Other | ||
RNA virus discovery | A. Baidaliuk | Sequence homology analysis | Coaching | Pending | ||
QTL mapping using new mouse reference genetic populations | J. Jaubert | BiostatisticsChromatin conformation captureGeneticsGenome analysis | Pending | |||
Development of a secure API for ARIAweb | B. Bardiaux | Web development | Medium | In Progress | Department of Structural Biology & Chemistry | |
Development of a web server to calculate functional binding sites using Deep Learning | O. Sperandio | Web development | Long | In Progress | Department of Structural Biology & Chemistry | |
Comparing viral replication of intergenotypic hepatitis C virus Core recombinants | E. Simon | Biostatistics | Short | Awaiting Publication | Department of Virology | |
Etude de l’évolution des Troubles Olfactifs chez les patients ayant une perte de l’odorat persistante des suites de la COVID-19 | E. Poivet | Statistics | Medium | Pending | ||
Microbiology Course : Practical course "Antibiotic resistance" | I. Guilvout | Tool Development | Short | Closed | Other | |
Tests serologics anti-CNF1 | D. Guerin | Statistics | Closed | |||
Understanding IL-23 role in chronic inflammatory diseases in innate and adaptative immune cells | T. STEPHEN | RNA-seq | Medium | In Progress | Department of Immunology | |
Development of a contributor management webpage for iPPI-DB. | O. Sperandio | Web development | In Progress | Department of Structural Biology & Chemistry | ||
A pipeline to detect correlated evolution on phylogenetic trees | E. Rocha | Galaxy | Medium | In Progress | Department of Genome & Genetics | |
Codon usage dependent translation and antibiotic stress in V. cholerae. | Z. Baharoglu | Genome analysisSequence analysis | Medium | In Progress | Department of Genome & Genetics | |
Klebsiella MALDI-Typer | S. BRIDEL | Web development | In Progress | |||
Human ORFeome LIMS and website | Y. Jacob | Sofware development and engineeringWeb development | New | Department of Virology | ||
Rabomism - Understanding rabies virus tropism | L. Feige | Biostatistics | Short | Awaiting Publication | Department of Infection & Epidemiology | |
Statistical comparisons of Oroboros measurements | T. Wai | Biostatistics | Short | Closed | ||
Imprinting by immune cross regulation modulate airway allergic inflammation | J. RYU | Single Cell | Medium | In Progress | Department of Immunology | |
ANR Arbovec- CHIKV/Aedes interactions | B. Adrien | RNA-seq | Medium | Awaiting Publication | Department of Virology | |
PacBio sequencing of DM1 cells treated with a TALEN | G. RICHARD | Genomics | Declined | Department of Genome & Genetics | ||
Single-cell and spatial transcriptomics of cells of the hematopoietic and stromal lineages in the zebrafish embryo | A. SCHMIDT | Single CellTranscriptomics | Medium | In Progress | Department of Developmental & Stem Cell Biology | |
Identification of ASD markers using HD-EEG | L. Aline | Program developmentStatistics | Coaching | In Progress | Department of Neuroscience | |
Transcriptomics on mosquitoes | S. Merkling | Single CellTranscriptomics | Medium | Pending | Department of Genome & Genetics | |
Stem cells and systemic inflammation | B. Gayraud-Morel | Differential analysisFunctional AnnotationGenomicsSingle CellTranscriptomics | Medium | In Progress | Department of Developmental & Stem Cell Biology | |
Natural variation of TE content and expression in Aedes aegypti mosquitoes | L. Lambrechts | Annotation | Medium | In Progress | Department of Genome & Genetics | |
Genome analysis of the immunostimulatory commensal SFB | P. Schnupf | WGS metagenomics | Closed | Other | ||
BIGSdb-Pasteur web pages and design renewal | F. Palma | Web development | Medium | In Progress | Department of Microbiology | |
3DPATH | m. rincel | GeneticsStatistical experiment designStatistics | In Progress | Department of Immunology | ||
JASS 2 : Integrating functional annotation to a multi-trait GWAS web application | H. JULIENNE | User centered designWeb development | Medium | In Progress | ||
Analysis of genes transcription profiles in E.coli after expression of the T4 phage protein Ndd | F. Théo | Differential analysis | Medium | In Progress | Department of Genome & Genetics | |
Page web modélisation covid-19 pasteur | S. Cauchemez | Epidemiology and public healthWeb development | Medium | Closed | Department of Infection & Epidemiology | |
Asymmetric heart morphogenesis | B. Ségolène | Functional AnalysisRNA-seqStatisticsTranscriptomics | Long | In Progress | Department of Developmental & Stem Cell Biology | |
Validation of interactions between SARS-CoV-2 proteins and cellular proteins | G. Dugied | Statistics | Pending | Department of Virology | ||
Characterization of Salmonella mutants | F. NOREL | Genome analysis | Short | In Progress | Department of Structural Biology & Chemistry | |
Global BioID-based SARS-CoV-2 proteins proximal interactome unveils novel ties between viral polypeptides and host factors involved in multiple COVID19-associated mechanisms | Y. Jacob | Proteomics | Medium | In Progress | Department of Virology | |
Regulation of nasopharyngeal microbiome in normal healthy individuals | J. Di Santo | Comparative metagenomics | Medium | Pending | Department of Immunology | |
Mosquito vector competence for different RVFV variants | P. YEN | Genomics | Pending | Department of Virology | ||
Transcriptional profiling of the innate immune response of human fibroblasts of the LabEx Milieu interieur collection: interindividual variability and response to infection | B. DAVID-WATINE | Biostatistics | Pending | |||
Etude des TSS alternatif chez Cryptococcus | G. Janbon | RNA-seq | Medium | In Progress | Department of Mycology | |
HPV RNA-SEQ | P. Pérot | Machine learningStatisticsTool DevelopmentTranscriptomics | Long | In Progress | Other | |
basic alignment/visualisation pipeline | P. Navarro | Galaxy | Coaching | In Progress | Department of Developmental & Stem Cell Biology | |
Defining the effects of TNF-blockers and IL-17A-inhibitors on immune responses in spondyloarthritis patients, analysis of protein and gene expression signatures | L. Rogge | RNA-seq | Medium | In Progress | Department of Immunology | |
Regulation of IL-23 Receptor expression | E. Bianchi | ATAC-seqChIP-seq | Medium | In Progress | Department of Immunology | |
The master regulator of virulence gene expression in Group B Streptococcus | A. FIRON | Differential analysisRNA-seq | Short | Awaiting Publication | Department of Microbiology | |
Changes in cellular pathways during SARS-CoV-2 infection upon drug treatment | B. Meyer | Transcriptomics | Medium | Awaiting Publication | Department of Virology | |
Single-cell characterization of autoreactive IgG-secreting cells in Immune thrombocytopenia | P. Canales Herrerias | Biostatistics | Medium | Awaiting Publication | Department of Immunology | |
Identifying new population(s) of NK cells involved in memory to bacterial infection | M. Hamon | Single CellTranscriptomics | Medium | In Progress | Department of Cell Biology & Infection | |
Phages - bacteria interactions network of the healthy human gut | M. Marbouty | Chromatin conformation captureComparative metagenomicsStatistics | Short | Closed | Department of Genome & Genetics | |
Induction of highly efficient HIV-specific CD8+ T cell responses | A. SAEZ-CIRION | Statistics | Medium | Closed | Department of Virology | |
Transcriptional analysis of injured skeletal muscle | E. Rossi | Functional AnalysisPathway AnalysisRNA-seqTranscriptomics | Short | Closed | Department of Immunology | |
A cost-effective molecular Tool for Strengthening Antimalarial drug Resistance surveillance in Africa (TSARA) | D. Menard | GenomicsWorkflow and pipeline development | Coaching | In Progress | ||
Track Analyzer | A. Michaut | Program development | Coaching | In Progress | Department of Developmental & Stem Cell Biology | |
Setup of bioinformatic pipelines for paleo(meta)genomics | N. RASCOVAN | PhylogeneticsVariant analysis | In Progress | |||
Analyse statistique de données de phénotypage à haut débit | M. Legrand | Statistics | Short | Pending | Department of Mycology | |
Identification, structural and functional analyses of peptides from SARS-Cov2 binding with high affinity to MHC-E and impact on NK cell responses in SARS-Cov2 infection | H. Nicolas | Functional AnalysisTranscriptomics | Pending | Department of Virology | ||
Genome organization and synteny analysis of Yersinia pseudotuberculosis strains responsible for the Far-East Scarlatine-Like Fever | J. PIZARRO-CERDA | Comparative GenomicsData Visualization | Pending | Department of Microbiology | ||
Yersinomics SynTView instance deployment for 85 genomes and development of a SynTView javascript local view | J. PIZARRO-CERDA | Comparative GenomicsData Visualization | Medium | Pending | Department of Microbiology | |
Identification of the genetic basis of bacteriophage-resistant isolates | L. Debarbieux | EvolutionGeneticsGenotypingIllumina HiSeq | Pending | Department of Microbiology | ||
Conditionnal formating in an excel file for certain data over a certain period of time. | M. Pardos de la Gandara | Data and text mining | Short | Closed | Department of Infection & Epidemiology | |
Providing correlationPlus software to the scientific community for analysis of dynamical correlations in biological macromolecules | M. Tekpinar | Sofware development and engineering | Medium | Closed | Department of Structural Biology & Chemistry | |
Search for genetic determinants of aminoglycoside tolerance | Z. Baharoglu | Genomics | Medium | In Progress | Department of Genome & Genetics | |
Modulation of Flu transmission in Niger , according to climate variations over the past ten years | R. JAMBOU | BiostatisticsEpidemiology and public health | Short | Awaiting Publication | Other | |
Effect of metabolic disturbance on the host transcriptional profile during Chlamydia infection | A. Subtil | RNA-seqStatistics | Short | Declined | Department of Cell Biology & Infection | |
Correlative analysis between lipid droplets number and volume in hepatocytes infected by hepatitis C virus variants | E. Simon | Biostatistics | Short | Closed | Department of Virology | |
Biology of noncoding regulatory elements in Anopheles | K. VERNICK | Genetics | Medium | Pending | ||
Genetic association of malaria susceptibility by Anopheles population resequencing | K. VERNICK | Genetics | Medium | Pending | ||
NGS-based genetic linkage mapping in Anopheles | K. VERNICK | Genomics | Medium | In Progress | ||
Coaching in R | E. Bianchi | Data VisualizationMultidimensional data analysisStatistics | Coaching | In Progress | Department of Immunology | |
Analysis of the transcriptome during lyssavirus infection in torpid bat: an in vitro model. Act 1 | L. Dacheux | BiostatisticsDifferential analysisPathway AnalysisRead mappingRNA-seq | Short | Closed | Department of Infection & Epidemiology | |
Statistical analysis of qRT-PCR data | A. Proutière | Biostatistics | Short | Closed | Department of Microbiology | |
French GWAS Covid webpage | H. Aschard | Web development | Short | Closed | ||
Left-right patterning of heart precursors | T. Bønnelykke | Differential analysisFunctional AnalysisPathway AnalysisRNA-seqSingle CellTranscriptomics | Long | In Progress | Department of Developmental & Stem Cell Biology | |
An integrated software having a graphical user interface for the analysis of time-lapse images of bacterial microcolonies | G. MANINA | Image analysisUser centered designWeb development | Medium | Closed | Department of Cell Biology & Infection | |
Study of the deficiency in lactose utilization by Shigella strains | C. Parsot | Genome analysisGenomicsVariant analysis | Short | Closed | Department of Infection & Epidemiology | |
Proteomic analysis of Listeria monocytogenes molecules impacted upon exposure to Listeriolysin S | J. Pizarro-Cerda | Pathway AnalysisProteomics | Declined | Department of Microbiology | ||
A cost-effective molecular Tool for Strengthening Antimalarial drug Resistance surveillance in Africa (TSARA) | D. Menard | GenomicsWorkflow and pipeline development | Closed | |||
Research of orphan LytTR DNA-binding domain | A. Proutière | Functional Annotation | Declined | Department of Microbiology | ||
Building a database with a pattern mining system designed for virus nucleic acid data | R. Paul | Database | Declined | Department of Genome & Genetics | ||
Small RNA signature on RIG-I like receptors | A. Komarova | Transcriptomics | Medium | In Progress | Department of Virology | |
Determination of RABV RNAs signatures recognized by RLRs | W. Aouadi | Transcriptomics | Medium | Awaiting Publication | Department of Infection & Epidemiology | |
Identification of internal methylations of RABV mRNAs using RiboMeth sequencing approach | W. Aouadi | Transcriptomics | Medium | In Progress | Department of Infection & Epidemiology | |
Collaboration between CETEA, C2RA and Hub for optimization of experimental designs (3R) | M. Mattei | Statistical experiment designStatistics | Medium | In Progress | ||
Parvimonas micra's impact on primary human colonic cells DNA methylation | E. Bergsten | Biostatistics | Medium | In Progress | Department of Cell Biology & Infection | |
Analysis polymorphism in a specific gene of Aedes aegypti using exome sequencing data. | S. Merkling | Variant analysis | In Progress | Department of Genome & Genetics | ||
Mitochondrial polarization identifies functionally mature human NK cells | L. Surace | Functional AnalysisMetabolomics | Medium | Awaiting Publication | Department of Immunology | |
Genome-Wide Mapping of Integron Cassette Integration Target Sites. | C. Loot | Illumina MiSeqRead mappingSequence analysis | Medium | In Progress | Department of Genome & Genetics | |
Analysis of microbiota in Anopheles mosquitoes | P. BALDACCI | Targeted metagenomics | Pending | Department of Parasites and Insect Vectors | ||
Transcriptional regulation of bacterial physiology during host-pathogen interaction | A. FIRON | Differential analysisRNA-seq | Medium | Closed | Department of Microbiology | |
Modulation of cellular pathways involved in neuropathology of rabies infection | F. LARROUS | Differential analysisRNA-seq | Medium | Closed | Department of Infection & Epidemiology | |
Flemmingsome: A Midbody Remnant Proteome Database | N. Gupta-Rossi | Cell biology and developmental biologyWeb development | Closed | Department of Cell Biology & Infection | ||
Functinal analysis of proteome and phopshoproteome changes in murin intestine – mechanism of Streptococcus gallolyticus-induced carcinogenesis | E. Pasquereau | Pathway Analysis | Declined | Department of Microbiology | ||
improvement of new methodology for oral infection on mice | A. DERBISE | Biostatistics | Short | Closed | Department of Microbiology | |
Plasmodium vivax Invasion Pathways into Human Reticulocytes - VIPers | D. Menard | Population genetics | Coaching | Pending | Other | |
Implementation of the ViroScreen workflow in Galaxy | L. Dacheux | Galaxy | Short | In Progress | Department of Infection & Epidemiology | |
Deciphering the transcriptome profil during rabies infection in brain in mouse and in human | L. Dacheux | BiostatisticsFunctional AnalysisMicroarrayTranscriptomics | Short | Declined | Department of Infection & Epidemiology | |
Integration and advanced statistical analyses of complex datasets for host factor identification involved in Salmonella and Shigella intracellular niche formation | J. Enninga | Proteomics | Declined | Department of Cell Biology & Infection | ||
Récupération des données associées aux séquences de génomes de Klebsiella pneumoniae téléchargées du NCBI | N. CABANEL | Data management | Short | Closed | ||
Development and design of new functionalities for MEMHDX, a web application dedicated to the statistical analysis and vizualization of large HDX-MS datasets. | S. BRIER | StatisticsWeb development | Short | In Progress | ||
Off-target sites of Cas endonucleases targeted to trinucleotide repeats | G. RICHARD | Genomics | Closed | Department of Genome & Genetics | ||
Identification of non-coding RNAs under the control of the PerR regulators | N. Benaroudj | Non coding RNARNA-seqTranscriptomics | Short | Closed | Department of Microbiology | |
Shigella targeting of human colonic Lamina Propria Mononuclear Cells | K. Brunner | RNA-seqSingle Cell | Declined | Department of Cell Biology & Infection | ||
Cartography of the expansion of pathogenic Yersinia in Vietnam | G. Mas Fiol | Statistics | Short | Pending | ||
Evaluation of the mutation rate per site and dN/dS in the genomes of Yersinia enterocolitica | C. Savin | Phylogenetics | Short | Awaiting Publication | Department of Microbiology | |
Long-term preservation of a Campylobacter fetus strain and genomic stability | D. Clermont | Read mappingSequence analysis | Short | Closed | ||
Proteomic analysis of the intracellular compartments containing Brucella abortus | J. Pizarro-Cerda | Differential analysis | Short | In Progress | Department of Microbiology | |
Spatial analysis of cysticercosis seroprevalence in villages of Ivory Coast | R. JAMBOU | Statistics | Short | Closed | ||
SHERLOCK4HAT - WP1.1 | B. Rotureau | Motifs and patterns detection | Short | Closed | ||
Implementation of the ViroScreen workflow in Galaxy | L. Dacheux | GalaxyWorkflow and pipeline development | Short | Closed | Department of Infection & Epidemiology | |
MacSyFinder 2.0 | E. Rocha | Parallel computingScientific computingTool Development | Long | In Progress | Department of Genome & Genetics | |
MLST versus Short Tandem repeats (Microsatellites) for Pneumocystis jirovecii genotyping | M. Gits-Muselli | BiostatisticsEvolutionGeneticsGenotypingGraph theory and analysisPopulation genetics | Short | Closed | Department of Mycology | |
Secretome Analysis of OIS IL6KO SASP | M. von Joest | Proteomics | Short | In Progress | Department of Developmental & Stem Cell Biology | |
DNMT and RNMT in Leishmania | G. Spaeth | PhylogeneticsSequence homology analysis | Short | In Progress | Department of Parasites and Insect Vectors | |
Impact of APC gene mutations on anti-tumoral immune responses | V. Di Bartolo | Biostatistics | Short | Pending | Department of Immunology | |
Role of Tunneling nanotubes in Glioblastoma | G. Pinto | Statistics | Short | Closed | Department of Cell Biology & Infection | |
CRISPR design tools on crispr.pasteur.fr | D. Bikard | CRISPRWeb development | Medium | Closed | Department of Microbiology | |
Microscystis transcriptome | M. Gugger | Differential analysis | Medium | Awaiting Publication | Department of Microbiology | |
Bioinformatic analysis of paired alpha and beta T cell receptor sequences obtained at the single cell level by illumina sequencing | L. Chakrabarti | ImmunogeneticsProgram developmentSingle CellTool DevelopmentTranscriptomics | In Progress | Department of Virology | ||
Assessing the role of gut microbiota in spondyloarthritis patients and impact of anti-TNF treament on its composition | C. RICHARD-MICELI | Machine learningTargeted metagenomics | Closed | Department of Immunology | ||
Uncovering diversity and improving gene annotation of Leptospira sppo | M. PICARDEAU | Annotation | Coaching | Closed | Department of Microbiology | |
ICARE | N. Rosine | ClusteringExploratory data analysisFlow cytometry/cell sortingProgram developmentSofware development and engineeringStatistics | Medium | In Progress | Department of Immunology | |
Analysis of the clinical manifestations of Lyme borreliosis in France from 2003 to 2011 | V. Choumet | Epidemiology and public healthStatistics | Short | Awaiting Publication | Department of Infection & Epidemiology | |
Proteome remodeling induces by the Cytotoxic Necrotizing Factors 1 | L. TSOUMTSA | Functional Analysis | Short | Closed | ||
Multiparametric immunophenotyping of whole blood in IFN-treated multiple sclerosis patients | P. Devi | BiostatisticsFunctional AnalysisTranscriptomics | Short | Closed | Department of Immunology | |
Identification of mouse skin macrophage subpopulations | D. OBINO | Single Cell | Medium | Awaiting Publication | ||
Excess calorie intake early in life increases susceptibility to colitis in the adult | Z. Al Nabhani | Biostatistics | Short | Closed | Department of Immunology | |
Finding SNPs associated with Dengue infection in the mosquito Aedes aegypti | M. Sarah | TranscriptomicsVariant analysis | Short | Pending | Department of Genome & Genetics | |
Distribution of Cytotoxic necrotizing factor 1 among the sequence type 131 emergent multidrug resistant lineage of Escherichia coli | T. Landry Laure | Statistics | Short | Awaiting Publication | ||
Mechanisms of HIV-1-infected cells susceptibility to Fc effector functions | T. Bruel | BiostatisticsCRISPR | Short | In Progress | Department of Virology | |
Antiviral activities of anti-HIV-1 antibodies | T. Bruel | MicroarrayTranscriptomics | Short | Closed | Department of Virology | |
Serpentine: a flexible 2D binning method for differential Hi-C analysis | V. Scolari | BiostatisticsChromatin conformation capture | Short | Closed | Department of Genome & Genetics | |
Defining the differential contributions of CD4+ and CD8+ anti-CD19 CAR T cells to tumor outcome, immune recruitment and toxicity | M. Cazaux | RNA-seqSingle Cell | Short | Awaiting Publication | Department of Immunology | |
Characterization of the bacterial and fungal microbiota in Aedes aegypti natural breeding sites and larvae | L. LAMBRECHTS | Shotgun metagenomics | Awaiting Publication | Department of Genome & Genetics | ||
Quality controls for human plasmas and serums stored in biobanks | H. LAUDE | Statistics | Short | In Progress | Department of Microbiology | |
The anti-IgE antibody Omalizumab induces adverse reactions through engagement of Fc gamma receptors | B. Balbino | Biostatistics | Short | Closed | Department of Immunology | |
Targetting the function of a hypothetical protein | D. Czernecki | Sequence analysis | Short | Pending | Department of Structural Biology & Chemistry | |
Analysis of Internal Deletions in EV71 | B. Meyer | Sequence analysis | Short | Pending | Department of Virology | |
maintenance du site de la Collection des cyanobactéries | B. BENEDIC | Web development | Short | Closed | Department of Microbiology | |
Heterogeneity of the skeletal muscle microenvironment | L. Peduto | RNA-seqSingle Cell | Short | In Progress | Other | |
Defective interfering viral genomes of shrimps' viruses | A. Komarova | Sequence designWorkflow and pipeline development | Short | Awaiting Publication | Department of Virology | |
Optimisation of freeze and conservation method of peripherical blood mononucleated cells | S. Vallier | BiostatisticsExploratory data analysisFlow cytometry/cell sorting | Medium | Pending | Other | |
Early transcriptional signature of T-cell memory after dengue vaccination | C. Roth | Differential analysisRNA-seq | Short | Closed | Department of Genome & Genetics | |
Chikungunya virus adaptation to a low temperature in a French population Ae. albopictus | R. Bellone | Data VisualizationVariant analysis | Pending | Department of Virology | ||
Characterization of Yolk Sac Derived Progenitors in the Fetal Liver | L. Freyer | Single Cell | Medium | In Progress | Department of Developmental & Stem Cell Biology | |
Intégration d'outils bioinformatique dans Galaxy pour identification bactérienne | A. LE FLECHE | Galaxy | Short | Closed | ||
3D PATH | M. RINCEL | Association studiesBiostatisticsGeneticsMultidimensional data analysisStatistics | Closed | Department of Immunology | ||
Remettre les servers Genolist comme LegioList, TuberclListe, Colibri etc en service | C. Buchrieser | Web development | Closed | Department of Genome & Genetics | ||
Move of the DISCO-BAC server VM to the new DSI infrastructure | B. Schwikowski | Web development | Short | Closed | Department of Genome & Genetics | |
Targeted search of specific commensals in 16S databases | P. Schnupf | Targeted metagenomics | Short | Closed | Department of Cell Biology & Infection | |
Hamper cell-to-cell variation to enhance drug-mediated killing | G. MANINA | Biostatistics | Short | Pending | Department of Cell Biology & Infection | |
Determination of the transcriptome controlled by the two-component system BvrR/BvrS using dominant positive and negative BvrR mutants | J. PIZARRO-CERDA | Differential analysis | Coaching | Awaiting Publication | Department of Microbiology | |
Build a software to decipher Gephyrin alternative transcripts obtained with long read sequencing | a. eric | Tool Development | Long | Closed | Department of Developmental & Stem Cell Biology | |
Identifying subpopulation-specific signatures of tuberculosis persistence for enhanced diagnostics. | G. MANINA | Differential analysisRNA-seq | Medium | Awaiting Publication | Department of Cell Biology & Infection | |
Analyse transcriptionnelle du cellules cancéreuse intestinal vs normales après co-culture avec la bactérie associée au cancer Streptococcus gallolyticus | E. Pasquereau | Pathway Analysis | Closed | Department of Microbiology | ||
Genomic DNA sequencing of Burkholderia ambifaria Q53 strain isolated from peanut rizospheric soil | M. BEN ASSAYA | AnnotationVariant analysis | Closed | Department of Structural Biology & Chemistry | ||
Role of RNA primary and secondary structure in non-homologous recombination | B. Meyer | Statistics | Declined | Department of Virology | ||
LGP2 binds PACT to regulate RIG-I- and MDA5-mediated antiviral response | A. Komarova | Biostatistics | Short | Closed | Department of Virology | |
Afribiota-Neuro | P. Vonaesch | Biostatistics | Medium | Closed | Department of Cell Biology & Infection | |
Gene expression and its regulation during and after inpatient detoxification of cocaine: a link to relapse? | R. Icick | RNA-seq | Medium | In Progress | Department of Neuroscience | |
Single nucleotide polymorphisms and genome organization in members of the genus Yersinia | J. PIZARRO-CERDA | Comparative GenomicsData Visualization | Short | Closed | Department of Microbiology | |
Séquençage à haut débit (NGS) et traitement de séquences ADN des domaines variables d’anticorps simple chaine d’alpaga (domaines VHH ou Nanobodies®) | M. Gomes | Sequence homology analysisSequencingWorkflow and pipeline development | Short | In Progress | Department of Structural Biology & Chemistry | |
Genetic and statistical analysis of data produced with the Collaborative Cross at the Institut Pasteur | X. MONTAGUTELLI | GeneticsVariant analysis | Long | In Progress | ||
crispr.pasteur.fr | D. Bikard | Data VisualizationWeb development | Short | Closed | Department of Microbiology | |
Comparative genomics of Listeria monocytogenes isolates | M. Lecuit | Sequence analysis | Medium | Awaiting Publication | Department of Cell Biology & Infection | |
Identification d’une mémoire épigénomique à Streptococcus pneumoniae | C. CHEVALIER | ChIP-seqDifferential analysis | Medium | Awaiting Publication | Department of Cell Biology & Infection | |
Impact des contraintes biomécanistiques sur la dynamique des macro-ouverture induits par l'EDIN de Staphylococcus aureus. | C. MOREL | Biostatistics | Short | In Progress | ||
Training project for bacterial ChIP-seq Analysis on Streptococcus agalactiae | M. Mazzuoli | ChIP-seqWorkflow and pipeline development | Coaching | Closed | Department of Microbiology | |
Determination of host response elicited by different Salmonella lifestyles | C. LUK | RNA-seqStatistics | Coaching | Declined | Department of Cell Biology & Infection | |
Tissue-resident stromal cell heterogeneity | L. Peduto | Single Cell | Medium | Closed | Department of Immunology | |
Comparative genomics of Helicobacter pylori bismuth resistant strains | H. DE REUSE | Comparative GenomicsVariant analysis | Short | Awaiting Publication | Department of Microbiology | |
Viral Host Range Databank | L. Debarbieux | Data integrationData managementData VisualizationWeb development | Medium | Closed | Department of Microbiology | |
DNMT orthologs in Leishmania | S. Lamotte | Sequence homology analysis | Short | Closed | Department of Parasites and Insect Vectors | |
Genome-wide interactions between HP1g and RNA. | C. Rachez | ChIP-seqRNA-seq | Short | Closed | Department of Developmental & Stem Cell Biology | |
Sequence analysis of Mycobacterium marinum mutants | M. Cimino | AnnotationGenome assemblyVariant analysis | Short | Closed | ||
Functional interactomics of SKAP2 | J. Bureau | Functional Analysis | Short | Closed | Department of Genome & Genetics | |
Role of small non coding RNAs in the adaptive response to oxidative stress in pathogenic Leptospira | N. BENAROUDJ | RNA-seq | Short | Closed | Department of Microbiology | |
Asymptomatic pathogen carriage in stunted and non-stunted children living in Antananarivo, Madagascar | P. Vonaesch | BiostatisticsData and text miningData integrationExploratory data analysis | Short | Awaiting Publication | Department of Cell Biology & Infection | |
Cellular plasticity during mammary gland development | H. LI | RNA-seqSingle Cell | Short | Declined | Department of Developmental & Stem Cell Biology | |
Rainfalls and water contamination in Antananarivo over 25 years | J. Ronan | Statistics | Short | Closed | Other | |
Role of the Topoisomerase 1 and Guanine quadruplexes as transcriptional regulators | M. LAVIGNE | Transcriptomics | Medium | Awaiting Publication | Department of Virology | |
Toxin induced dephosphorylation of H3S10 | M. Hamon | ChIP-seq | Declined | Department of Cell Biology & Infection | ||
Genome annotation of sequenced bacteria of the Culture Collection of the Pasteur Institut | M. Pina | Annotation | Declined | Department of Microbiology | ||
Comparison of matrices of antibody gene usage | P. BRUHNS | BiostatisticsData VisualizationParallel computingStatistical inference | Medium | In Progress | Department of Immunology | |
High content screening of mitochondrial morphology defects in mitochondrial genetic diseases | T. Wai | BiostatisticsImage analysisMachine learning | Short | Closed | ||
Identification of eukaryotic 5'UTRs | A. ECHARD | Motifs and patterns detectionTranscriptomics | Short | Closed | Department of Cell Biology & Infection | |
Pasteur MLST: Institut Pasteur genomic taxonomy database of microbial strains | S. Brisse | Comparative GenomicsComparative GenomicsDatabaseWeb development | Medium | In Progress | Other | |
Analysis of neuronal population dynamics in rodents during virtual navigation | C. Schmidt-Hieber | Neuroimaging and computational neuroscienceProgram developmentSofware development and engineeringTool Development | Short | Closed | ||
functional enrichment of RNA processing factors associated with proteins of influenza viruses | C. Demeret | Databases and ontologies | Short | Awaiting Publication | Department of Virology | |
Identification of immune response signatures that correlate with therapeutic responses to TNF inhibitors using machine-learning algorithms | L. Rogge | BiostatisticsMachine learning | Medium | Closed | Department of Immunology | |
The Flemmingsome: the proteome of intact cytokinetic midbodies | N. GUPTA-ROSSI | Cell biology and developmental biologyDatabaseProteomicsWeb development | Short | Closed | Department of Cell Biology & Infection | |
Automated merging of CSV documents. | M. Mistretta | Data management | Short | Closed | Department of Cell Biology & Infection | |
Transcriptomics of Anopheles – Plasmodium vivax interactions towards identification of malaria transmission blocking targets | C. Bourgouin | AnnotationDifferential analysisNon coding RNARNA-seqTranscriptome assembly | Long | Closed | Department of Genome & Genetics | |
Ecological evolution in Klebsiella | J. Lopez Fernandez | BiostatisticsPhylogenetics | Short | Closed | Department of Infection & Epidemiology | |
An Aedes albopictus-driven epidemiological prediction for arboviral diseases outbreak in Europe | P. Yen | Epidemiology and public health | Closed | Department of Virology | ||
Heterogeneity of tissue resident stromal cells | D. Al-Dhahri | Single Cell | Medium | Awaiting Publication | Department of Immunology | |
Antimalarial drug resistance in Africa: A comprehensive molecular analysis of the emergence of artemisinin resistant parasites in Africa | D. Menard | PhylogeneticsPopulation geneticsVariant analysis | Short | Closed | Department of Parasites and Insect Vectors | |
Understanding the pathways of small RNA production during Meiotic Silencing by Unpaired DNA (MSUD) in the fungus Neurospora crassa | E. Gladyshev | Non coding RNAWorkflow and pipeline development | Long | Closed | Other | |
Characterization of Yolk Sac Derived Progenitors in the Fetal Liver | L. Freyer | Single Cell | Long | In Progress | Department of Developmental & Stem Cell Biology | |
Assessing the integrations of viral sequences into the genomes of Aedes albopictus and Aedes aegypti | V. Houé | GenomicsHost-pathogen interactions | Short | Closed | Department of Virology | |
Phage infection dynamics in the gut of gnotobiotic mice | M. Mansos Lourenco | BiostatisticsqPCR | Short | Closed | Department of Microbiology | |
Analyse d’expression de gènes de la réponse immune par voies fonctionnelles | F. Michel | Pathway Analysis | Short | Closed | Other | |
Dynamic and integrative multidimensional OMICs analysis of the cellular senescence fate | O. Bischof | ATAC-seqChIP-seqData integrationEpigenomicsModelingMotifs and patterns detectionTranscriptomics | Long | Closed | Department of Cell Biology & Infection | |
Dissecting Peptidoglycan pathways in human near-haploid cells | M. Fanton d\'Andon | Genomics | Medium | Closed | Department of Microbiology | |
High-throuput nanobodies (VHH) screening and sequencing | M. Marinozzi | Sequence analysis | Declined | Department of Structural Biology & Chemistry | ||
Development of a Software tool to integrate Bottomp-up, Middle-down and Top-down proteomics data | M. Matondo | Data VisualizationUser centered designWeb development | Medium | Declined | ||
Implémentation d’un algorithme rapide de génotypage cgMLST | V. BOUCHEZ | Algorithmics | Short | Closed | Department of Infection & Epidemiology | |
ChIP-seq analysis of the majour regulator of GBS virulence | m. mazzuoli | ChIP-seq | Short | Closed | Department of Microbiology | |
Fusion proteins in mammals and yeasts | F. Rey | PhylogeneticsSequence analysis | Short | Closed | Department of Virology | |
Genetic traits involved in the regulation of NK cell and ILC homeostasis and NK cell-mediated anti-tumor functions | C. Vosshenrich | BiostatisticsGenotypingStatistics | Short | Closed | Department of Immunology | |
Defining Shigella-targeting of human lamina propria mononuclear cells using CyTOF technology | K. Brunner | CytometryDifferential analysisSingle Cell | Short | Closed | Department of Cell Biology & Infection | |
Search for non-annotated transcripts in zebrafish lymphocytes | J. Levraud | Declined | Department of Developmental & Stem Cell Biology | |||
Exploring immunological mechanisms of human graft-verus-host disease after hematopoietic stem cell transplantation | E. Latis | Differential analysis | Short | Closed | Department of Immunology | |
MOODel: Modeling Mood Disorders | A. A. Dargél | ClusteringStatistical inference | Long | Closed | Department of Neuroscience | |
Role of ATM in EBV latency | M. Lecuit | Differential analysisRNA-seqStatistics | Short | Closed | Department of Cell Biology & Infection | |
Next Generation Surveillance of Salmonella and Shigella infections | F. Weill | Genome analysisPhylogenetics | Declined | Department of Infection & Epidemiology | ||
Transcriptome of epithelial cells challenged with different serotypes of S. pneumoniae | M. Connor | Transcriptomics | Declined | Department of Cell Biology & Infection | ||
Modulation of neutrophil cytosolic proteome in GCSF-treated patients. Impact of sample treatment | M. Benoit | Proteomics | Closed | Department of Cell Biology & Infection | ||
Analyse statistique d'interactions protéine-protéine | G. Edith | InteractomicsStatistical inference | Short | Closed | Department of Cell Biology & Infection | |
Extracting spatiotemporal gene expression activity from live biological tissues | T. Gregor | Applied mathematicsBiophysicsModelingSystems Biology | Medium | Declined | ||
State and parameter inference for stochastic models of gene expression | J. Ruess | Applied mathematicsModelingSingle CellStatistical inferenceSystems Biology | Long | Closed | Other | |
Identification of the mouse and/or rat orthologues of the human gene ANOS1, responsible for the X-chromosome-linked form of Kallmann syndrome | J. HARDELIN | AnnotationGenomics | Short | Closed | Department of Neuroscience | |
characterization of RNA virus populations from untargeted NGS in natural infections samples | E. Simon-Loriere | RNA-seq | Closed | Department of Virology | ||
Evaluation de la représentativité génétique d'un pool de souches | E. Sitterlé | Statistics | Short | Closed | Department of Mycology | |
Analysis of methylation for HIV patients with co-infections | Y. Madec | BiostatisticsData integrationEpidemiology and public healthEpigenomicsGenotypingStatistics | Short | In Progress | Department of Infection & Epidemiology | |
BD-CheM - Development of a chemical database to store structural and physico-chemistry data | O. Sperandio | DatabaseWeb development | Short | Awaiting Publication | Department of Structural Biology & Chemistry | |
Insight into the Immune System: A bioresource and data-sharing platform to study chronic inflammatory diseases (IsIShare) | h. laude | BiostatisticsData integrationData management | Closed | Other | ||
CRC related Dysbiosis | S. Iradj | Metagenomics | Declined | Other | ||
Microbiota dysbiosis in human colon cancer | I. SOBHANI | Metagenomics | Medium | Closed | Other | |
Implication du plasmide pKOBEG dans le génome d'Escherechia coli 55989 | E. Gasiorowski | Escherichia coli | Short | Closed | Department of Microbiology | |
Physical Contact between human and non human primates in Southeastern Cameroon | V. Narat | ClusteringStatistical inference | Short | Closed | Department of Infection & Epidemiology | |
Mechanisms of phage resistance in Vibrio cholerae O1 biotype classic | P. Kaminski | Sequence analysis | Short | Closed | Department of Microbiology | |
DNA encapsulation of human resources for research projects on immune system and inflammatory diseases | h. laude | MicroarraySNP | Short | Closed | Other | |
Analysis of DNA methylation in the presence and absence of antibiotics in wt and mutant V. cholerae | B. Zeynep | Bisulfite-seqVibrio cholerae | Medium | Closed | Department of Genome & Genetics | |
Phylogenetic analysis of HHD-PDZ containing proteins | N. Wolff | PhylogenySequence analysisPhylogeny/phylogeneticsSequence analysis | Short | Closed | Department of Neuroscience | |
Finding and Predicting CRISPR-Cas9 Efficiency | J. Wong Ng | Data VisualizationTool DevelopmentWeb development | Short | Closed | Department of Microbiology | |
Identification of APOBEC3 mutations in cancer genoms | V. CAVAL | Galaxy | Short | Closed | Department of Virology | |
Prediction of Congenital Infection in Tunisian Pregnant Women | B. Imene | Metagenomics | Declined | Other | ||
CNF-domain containing toxin family | E. Lemichez | Comparative Genomics | Short | In Progress | Department of Microbiology | |
Impact of gut microbiota on lipid metabolism | G. Chevalier | MetagenomicsMetabolomics | Short | Closed | Department of Immunology | |
Duplications in bacteriophage genomes. | L. De Sordi | Assembly | Medium | Closed | Department of Microbiology | |
Identification of Ago2-bound nuclear transcripts and genomic loci in adult zebrafish neural stem cells | B. Laure | ChIP-seqRNA-seq | Coaching | Closed | Department of Developmental & Stem Cell Biology | |
Characterization of the role of Argonaute proteins in regulating germline gene expression at the transcriptional and the post-transcriptional levels. | G. CECERE | Differential analysisEpigenomicsNon coding RNAProgram developmentRibosome profilingRNA-seqTranscriptomicsWorkflow and pipeline development | Long | In Progress | ||
Mapping of Enhancers from transcriptome data | C. MUCHARDT | EpigenomicsTranscriptomics | Long | Closed | Department of Developmental & Stem Cell Biology | |
Analysis of IFITM RNA levels in vraious cell types and tissues | O. Schwartz | Differential analysisRNA-seqStatisticsTranscriptomics | Medium | Closed | Department of Virology | |
Evolutionary approach to protein thermal stability | N. Reyes | Sequence analysis | Medium | In Progress | Department of Structural Biology & Chemistry | |
VCF filtering script | N. Elisabeth | Variant analysis | Short | Closed | Department of Infection & Epidemiology | |
Genomic determinants for initiation and length of natural antisense transcripts in a compact eukaryotic genome and phylogenetic analysis of related Entamoeba species | N. GUILLEN | Non coding RNAPhylogeneticsRNA-seqSequence analysisTranscriptomics | Long | Closed | Department of Parasites and Insect Vectors | |
Channels in metagenomics data | D. Marc | Metagenomics | Short | Closed | Department of Structural Biology & Chemistry | |
Phylogenetic analysis of insect-specific flaviviruses | A. Baidaliuk | Phylogeny/phylogenetics | Short | Closed | Department of Genome & Genetics | |
Characterization of a Salmonella mutant carrying a single amino-acid substitution in the stress sigma factor RpoS | F. NOREL | RNA-seq | Short | Closed | Department of Structural Biology & Chemistry | |
Genotype to phenotype analysis of immune responses in chronic inflammatory diseases | E. Bianchi | GenotypingImmunogeneticsMachine learningStatisticsTranscriptomics | Long | In Progress | Department of Immunology | |
The resurgence of a neglected disease, Yellow fever: from jungle to urban environments | A. FAILLOUX | Variant analysis | Medium | Closed | Department of Virology | |
Environmental and human surveillance of polioviruses, VDPVs, and other enteroviruses in Madagascar and the impact during the switch from tOPV to bOPV | P. Polston | Metagenomics | Long | Closed | Department of Virology | |
Amélioration des techniques permettant la détection de poliovirus dans l'environnement. | M. Bessaud | Poliovirus | Declined | Department of Virology | ||
Détection et assemblage d’entérovirus dans des échantillons cliniques et environnementaux | M. Bessaud | AssemblyMetagenomicsEnterovirusesPoliovirus | Medium | Closed | Department of Virology | |
De novo sequencing and analysis of three unassigned species of non tuberculous mycobacteria. | R. GHARBI | Assembly | Short | Closed | Department of Genome & Genetics | |
viral evolution around Ebola Treatment Center in Macenta | C. Picard | PhylogeneticsVariant analysis | Short | Closed | Department of Virology | |
identification of sRNA in Leptospira biflexa and influence of a putative Hfq on the transcriptome | M. PICARDEAU | RNA-seq | Short | Closed | Department of Microbiology | |
AIMyc: Analysis of the Impact of antibiotics, antifungals on the Mycobiome of allogeneic stem cell recipients. | A. Alexandre | Metagenomics | Short | Closed | Department of Mycology | |
Trichosporon asahii NGS analysis | M. Desnos-Ollivier | Comparative GenomicsGenome assemblyVariant analysis | Short | Closed | Department of Mycology | |
Assembly of insect virus genome | K. Eiglmeier | Galaxy | Short | Closed | Department of Parasites and Insect Vectors | |
Effects of expanded-spectrum cephalosporins ( ceftriaxone or céfotaxime) on the human gut Mycobiome | M. Bougnoux | Targeted metagenomics | Short | Awaiting Publication | Department of Mycology | |
Characterizaion of the microbiome of lab colonies of Aedes aegypti | L. Dickson | Metagenomics | Short | Closed | Department of Genome & Genetics | |
Super-resolution imaging and reconstructions of human cell chromosome architecture | X. Hao | 3CGenomics | Short | Closed | Department of Cell Biology & Infection | |
Functional interactions between HP1 proteins and RNA. | C. RACHEZ | Differential analysisRNA-seqTranscriptomics | Short | Closed | Department of Developmental & Stem Cell Biology | |
Biomarqueurs d’identification précoce du sepsis aux urgences (BIPS) | J. Cavaillon | Statistics | Short | Closed | Department of Infection & Epidemiology | |
Multi-traits GWAS in Malaria | A. Sakuntabhai | Statistics | Declined | Department of Genome & Genetics | ||
the role of host defense in female genital tract infection by Chlamydia trachomatis | y. wu | Differential analysisqPCRStatistical inference | Short | Closed | Department of Cell Biology & Infection | |
Comparing V-J gene usage for specific antibody generation | P. Bruhns | Statistical inference | Short | Closed | Department of Immunology | |
Relationships between ESBL-producing Escherichia coli from food and healthy mothers in Phnom Penh, Cambodia | M. Nadimpalli | AnnotationAssemblyPhylogenyEscherichia coli | Short | Closed | Department of Infection & Epidemiology | |
NOXO1 interacting partners in intestinal epithelial cells under inflammatory and infectious conditions | B. MARTEYN | Proteomics | Short | Closed | Department of Cell Biology & Infection | |
Investigating developmental defects of a C. trachomatis mutant strain | A. Subtil | Statistical inference | Short | Closed | Department of Cell Biology & Infection | |
Heritability of the melatonin synthesis pathway in Autism Spectrum Disorders | M. Benabou | GeneticsStatistics | Short | Closed | Department of Neuroscience | |
Transcriptional profile of Nod2+ neurons upon MDP signaling | G. CHEVALIER | Differential analysisRNA-seq | Short | Closed | Department of Immunology | |
Assess possible correlations between enteric viruses found in sewage waste water and healthy Roma children in Romania in the period 2016-2017 | A. Baidjoe | Metagenomics | Short | Closed | Department of Virology | |
Analyse génomique de corynebacterie | M. BEN ASSAYA | Sequence analysisVariant analysis | Short | Closed | Department of Structural Biology & Chemistry | |
Infection of Ixodes ricinus by Borrelia burgdorferi sensu lato by in peri-urban forests of France | V. Choumet | ModelingStatistics | Short | Closed | Department of Infection & Epidemiology | |
Experimental evolution of Chikungunya and Zika viruses’ strains to study emerging variants. | M. Vignuzzi | CNVSNPData VisualizationPhylogeny/phylogenetics | Medium | Closed | Department of Virology | |
Salmonella CRISPR database | L. Fabre | CRISPRTool Development | Short | Closed | Department of Infection & Epidemiology | |
Metabolic characterization of ILCs under homeostatic or stress conditions | L. Surace | Data integrationData managementData VisualizationMetabolomicsPathway AnalysisStatistics | Short | Closed | Department of Immunology | |
Common and phylogenetically widespread coding for peptides by bacterial small RNAs – Follow up of a project regarding its journal review | B. Schwikowski | DatabaseSystems BiologyWeb development | Closed | Department of Genome & Genetics | ||
Performing Gene Ontology Analysis on RNAseq data in Aedes aegypti | S. Merkling | RNA-seq | Short | Closed | Department of Genome & Genetics | |
INNOV DIAG HPV VALOEXPRESS | P. Pérot | Diff. ExpressionStatisticsTool Development | Short | Closed | Department of Cell Biology & Infection | |
Looking for the SNPs in evolved Corynebacterium diphtheriae genomes | S. BRISSE | CNVSNP | Closed | Department of Infection & Epidemiology | ||
TB drugs and host response | L. Tailleux | RNA-seq | Short | Closed | Department of Genome & Genetics | |
Evaluation of the GO annotation of the Leishmania donovani genome | G. Spaeth | Annotation | Declined | Department of Parasites and Insect Vectors | ||
Transcriptomic analysis of blood cells from ebola infected patients | S. REYNARD | Differential analysisMicroarrayPathway AnalysisStatistics | Short | Closed | Department of Virology | |
Genomic analysis of catheter-related Escherichia coli infection | C. BELOIN | Comparative GenomicsGenome assembly | Short | Closed | Department of Microbiology | |
Lipid-binding domains in Vaccinia virus proteins | E. Quemin | Sequence analysis | Short | Closed | Department of Cell Biology & Infection | |
Histone Methyltransferase and Demethylase in Leishmania | S. Lamotte | PhylogeneticsSequence analysis | Short | Closed | Department of Parasites and Insect Vectors | |
ModeMood: Modeling Mood Disorders | A. Ayub Dargél | Statistics | Short | Closed | Department of Neuroscience | |
Bioinformatic analysis of the adenylate cyclase CyaA toxin | A. Chenal | Sequence analysisStructural bioinformatics | Short | Closed | Department of Structural Biology & Chemistry | |
Genetic profile of patients with dyslexia | C. Leblond | GeneticsGenotypingStatistics | Medium | In Progress | Department of Neuroscience | |
Characterization of an RNA binding protein of Listeria monocytogenes | A. Pagliuso | RNA-seq | Short | Closed | Department of Cell Biology & Infection | |
MacSyDBCapsule | E. Rocha | Tool Development | Short | Closed | Department of Genome & Genetics | |
Extraction of sequence information from published genomes of commensal bacteria | P. Schnupf | Comparative GenomicsOrthology and paralogy analysisSequence homology analysis | Short | Closed | Department of Cell Biology & Infection | |
Statistical analysis of PI survey for the scientific direction | G. Chevalier | ClusteringDimensional reductionStatistics | Short | Closed | Other | |
Identification de SNP entre 2 souches bactériennes | L. Debarbieux | AssemblyComparative GenomicsOmicsSNP | Short | Closed | Department of Microbiology | |
Gene expression profiling in Kupffer cells | Y. Wei | Pathway Analysis | Short | Awaiting Publication | Department of Virology | |
Recombination among enteroviruses | M. Bessaud | Tool Development | Short | Pending | Department of Virology | |
Automatic detection of antibiotic resistance genes | O. Chesneau | Sequence analysis | Short | In Progress | Other | |
Research of SNPs to explain the non virulent phenotype of a mutant of L. interrogans serovar Manilae L495 affecting the expression of a protein not involved in virulence | C. WERTS | Variant analysis | Short | Closed | Department of Microbiology | |
Graphical representation of co-expressed genes in various datasets | P. Jean-Jacques | Microarray | Short | Closed | Department of Developmental & Stem Cell Biology | |
Role of PerR-regulated oxidative stress response in pathogen Leptospira virulence | N. Benaroudj | Variant analysis | Short | Closed | Department of Microbiology | |
Discovery of non-annotated transcripts in RNAseq data from Aedes Aegypti | S. Merkling | AnnotationRNA-seqTranscriptome assemblyTranscriptomics | Short | Closed | Department of Genome & Genetics | |
Study of the early pathogenesis during Lassa fever in cynomolgus monkeys and its correlation with the outcome | S. Baize | Differential analysisPathway AnalysisRNA-seq | Long | In Progress | Department of Virology | |
Quantitative temporal analysis of cellular proteins regulated by HBV in primary human hepatocytes | C. Neuveut | Differential analysisProteomics | Short | Declined | Department of Virology | |
Caractéristiques génomiques de souches d’Escherichia coli productrices de BLSE associées à un portage persistant après un voyage en zone tropicale | L. Armand | Statistics | Declined | Department of Genome & Genetics | ||
Comparative analysis of transcriptomic and proteomic data to study RNA and protein expression regulation during RVFV infection in mice. | B. Magali | Differential analysisMicroarray | Short | Pending | Department of Developmental & Stem Cell Biology | |
Gene ontology analysis of RNAseq data from uninfected and Leishmania-infected mouse macrophages | E. Prina | Pathway Analysis | Short | Closed | Department of Parasites and Insect Vectors | |
Comparative analysis of gene expression pattern between samples of tumor and normal mice tissue | E. CHALATSI | Differential analysisMicroarrayPathway Analysis | Declined | Department of Cell Biology & Infection | ||
Comparative analysis of gene expression in different human cell clones | P. GARCIA GUTIERREZ | Differential analysis | Short | Closed | Department of Cell Biology & Infection | |
Differentiation of Shigella species from Escherichia coli by MALDI-TOF mass spectrometry | S. Lefèvre | Proteomics | Short | Awaiting Publication | Department of Infection & Epidemiology | |
Single cell analysis of HIV-specific CD4+ T cell differentiation | L. Chakrabarti | Single Cell | Medium | Closed | Department of Virology | |
JASS: an online tool for the joint analysis of GWAS summary statistics | H. Aschard | Data VisualizationGeneticsStatisticsTool DevelopmentWeb development | Medium | Closed | Centers | |
Immune control of the gut microbiota and lifespan of A. stephensi. | E. Bischoff | Shotgun metagenomics | Short | Closed | Department of Parasites and Insect Vectors | |
Characterization of the specific TCR repertoire preferentially expressed in spontaneously controlled HIV infection | V. Libri | AnnotationRNA-seqSingle Cell | Declined | Centers | ||
Utilize mouse models to study infection by HIV-1 | V. Libri | qPCRSequence analysis | Short | Closed | Centers | |
A novel MacSyFinder module for detection of bacterial capsule systems on the future Galaxy platform. | E. Rocha | Tool Development | Short | Closed | Department of Genome & Genetics | |
Add unit tests to IntegronFinder | E. Rocha | Tool Development | Short | Closed | Department of Genome & Genetics | |
Development of a new web interface for ARIA | B. Bardiaux | GalaxyStructural bioinformaticsWeb development | Long | Closed | Department of Structural Biology & Chemistry | |
In silico analyses of a novel LincRNA potentially involved in type I IFN response | E. Rubino | Non coding RNATranscriptomics | Short | Closed | Department of Immunology | |
Development of top-down proteomics for clinical microbiology | J. Chamot-Rooke | ProteomicsTool Development | Short | Closed | Department of Structural Biology & Chemistry | |
Analysis of DNA methylation in the presence and absence of antibiotics in wt and mutant V. cholerae. | z. Baharoglu | Bisulfite-seqEpigenomics | Medium | Closed | Department of Genome & Genetics | |
Detection of virulence Genes and genes of interest in Bacillus cereus | D. Clermont | Comparative Genomics | Short | Closed | Department of Microbiology | |
optimisation d\'un programme sous R | P. Commere | CytometryStatistics | Short | Closed | Other | |
Activation of plasmacytoïd dendritic cells by arenaviruses : transcriptomic analysis | J. Schaeffer | Differential analysisPathway Analysis | Short | Closed | Department of Virology | |
Genomic analysis of bacterial evolution | L. Debarbieux | Comparative GenomicsSNP | Declined | Department of Microbiology | ||
Genomic differences of the same strains preserved in different culture collections | D. Clermont | Variant analysis | Closed | Department of Microbiology | ||
Modeling mitochondrial metabolism dormant Cryptococcus neoformans | B. Hommel | GenomicsProteomicsSystems BiologyTranscriptomics | Closed | Department of Mycology | ||
Development of a web application and new functionalities for the maintenance and curation of iPPI-DB | O. Sperandio | DatabaseGalaxyStructural bioinformaticsWeb development | Long | Closed | Centers | |
Determination of phage termini using NGS | D. Bikard | Sequence analysisStatistics | Declined | Department of Microbiology | ||
Cytokinesis study | N. GUPTA | Proteomics | Medium | Declined | Department of Cell Biology & Infection | |
Gene Ontology and sequence analysis of proteomics data on mycolactone effects on dendritic cells. | J. Morel | ProteomicsSequence analysis | Short | Closed | Department of Immunology | |
RNA analysis underlying phenotype of mouse model for autism | B. Thomas | RNA-seqStatistics | Medium | Awaiting Publication | Department of Neuroscience | |
Mapping the genomic architecture of human neuroanatomical diversity | R. Toro | StatisticsVariant analysis | Long | Closed | Department of Neuroscience | |
Insect Vector Genomics | K. Vernick | GeneticsGenomicsPopulation geneticsTranscriptomicsWGS metagenomics | Long | In Progress | Department of Parasites and Insect Vectors | |
Transcriptional regulation of innate lymphoid cell plasticity versus differentiation | R. GOLUB | Single CellStatistics | Short | In Progress | Department of Immunology | |
PhageTermini: a Fast and User-friendly Software to Determine Bacteriophage Packaging Mode and Termini | M. Monot | Galaxy | Short | Closed | Department of Microbiology | |
Regulation of HIV-1 integration selectivity by chromatin | M. LAVIGNE | Sequence analysisStatistics | Short | In Progress | Department of Virology | |
Identification of genes involved in the attenuation of virulence of rough M. abscessus Tn5 mutants in zebrafish | A. Pawlik | Variant analysis | Short | Closed | Department of Genome & Genetics | |
Identification of promoteur-overlaping antisense transcription | G. Badis-Bréard | Transcriptomics | Short | Closed | Department of Genome & Genetics | |
Tac4, a new RNA helicase involved in translation control? | M. Fromont-Racine | Transcriptomics | Short | Closed | Department of Genome & Genetics | |
Impact of hepatic inflammation on microbiota | Y. Wei | Shotgun metagenomics | Short | Awaiting Publication | Department of Virology | |
Measles virus protein C interplay with cellular apoptotic pathways; applications for cancer treatment | A. Meignié | Data VisualizationSystems BiologyTranscriptomics | Short | Closed | Department of Virology | |
Regulation of Sirtuin 2-dependent histone deacetylation during bacterial infection | J. Pereira | ChIP-seq | Short | Closed | Department of Cell Biology & Infection | |
Identification of Tac4 mRNA targets | M. Fromont-Racine | RNA-seq | Short | Awaiting Publication | Department of Genome & Genetics | |
Deciphering the composition dynamics of infant gut microbiome | X. GAO | Shotgun metagenomics | Short | Closed | Department of Infection & Epidemiology | |
Analysis of the transcriptome of malaria parasites | S. Vembar | Differential analysisRNA-seqTranscriptome assembly | Medium | Closed | Department of Parasites and Insect Vectors | |
Novel protein interaction in the assembly of photosynthetic prokaryotic complexes | G. Kufryk | Phylogenetics | Short | Pending | Department of Structural Biology & Chemistry | |
Dissecting the peptidoglycan trafficking machinery using gene trap mutagenesis in near-haploid human cells | C. Brenner | Genome assemblyStatistics | Medium | Closed | Department of Microbiology | |
IgBlast on Galaxy | T. Hieu | Galaxy | Short | Closed | Department of Immunology | |
Identification of new or unexpected pathogens, including viruses, bacteria, fungi and parasites associated with acute or progressive diseases | M. ELOIT | PhylogeneticsShotgun metagenomicsTool Development | Long | In Progress | Department of Cell Biology & Infection | |
Diffusion des mutations de résistance du VIH : modèles et méthodes d’estimation | O. Gascuel | Phylogenetics | Medium | Closed | Department of Genome & Genetics | |
Molecular analysis of muscle stem cells | F. Pala | Microarray | Medium | Closed | Department of Developmental & Stem Cell Biology | |
Nanotherapeutics for multidrug-resistant tuberculosis | L. Tailleux | RNA-seq | Short | Closed | Department of Genome & Genetics | |
Host gene regulation in response to Listeria monocytogenes infection | D. RIBET | Differential analysisMicroarrayStatistics | Short | Closed | Department of Cell Biology & Infection | |
Deconvolution of synthetic chromosomes in 3D | R. Koszul | Chromatin conformation capture | Declined | Department of Genome & Genetics | ||
Methylome analysis of a human progeroid disease for the detection of progeroid-specific alterations and their link with regular ageing | M. Ricchetti | Epigenomics | Medium | Awaiting Publication | Department of Developmental & Stem Cell Biology | |
Collaboration with the hub to develop ChiPseq and ATACseq analysis pipelines | J. Coppee | ATAC-seqChIP-seq | Medium | Closed | Department of Genome & Genetics | |
Comparative analysis of the virulence plasmids of Shigella Spp. and entero-invasive Escherichia coli | C. Parsot | Data VisualizationVariant analysis | Short | Closed | Department of Cell Biology & Infection | |
Label-free quantitative proteomics of Human Macrophages infected by M. tuberculosis | M. Matondo | Proteomics | Declined | Department of Structural Biology & Chemistry | ||
Rift valley fever NSm protein functional study | B. Magali | Differential analysisPathway AnalysisProteomics | Short | Awaiting Publication | Department of Virology | |
Zebrafish microbiota | F. Stressmann | Shotgun metagenomics | Short | Closed | Department of Microbiology | |
Comparative genomic and phylogenetic analysis of Clostridium botulinum strains | M. Christelle | Comparative GenomicsPhylogenetics | Declined | Department of Microbiology | ||
Patho-evolution of mycobacterial strains | E. Boritsch | Variant analysis | Short | Awaiting Publication | Department of Genome & Genetics | |
Deciphering dormancy in Cryptocococcus neoformans | B. Hommel | Statistics | Medium | Closed | Department of Mycology | |
Environmental and human surveillance of polioviruses, VDPVs, and other enteroviruses in Madagascar during the switch from tOPV to bOPV | P. Polston | Shotgun metagenomics | Medium | Closed | Department of Virology | |
Recherche de SNP chez une souche de leptospira biflexa d'interêt | B. Pascale | Comparative GenomicsData VisualizationVariant analysis | Short | Closed | Department of Microbiology | |
Genomic analysis of small orfs of unknown function | F. Norel | Comparative GenomicsSequence analysis | Short | Closed | Department of Microbiology | |
Prediction of RNA-RNA interactions between a family of GC-rich ncRNAs and nascent transcripts of virulence genes in Plasmodium falciparum | A. Barcons Simon | Non coding RNA | Short | Closed | Department of Parasites and Insect Vectors | |
HSC3D | P. Clerc | GenomicsSingle Cell | Short | Closed | Department of Developmental & Stem Cell Biology | |
Comparative genomic and phylogenetic analysis of Clostridium baratii strains | C. MAZUET | PhylogeneticsSequence analysis | Short | Closed | Department of Microbiology | |
Gene Expression analysis | D. Sophie | Differential analysisMicroarrayStatistics | Short | Closed | Department of Immunology | |
BrainEvo | G. Dumas | Data Visualization | Declined | Department of Neuroscience | ||
Bioinformatic analysis of phospholipase A2 (PLA2) from P. falciparum | A. Alaganan | PhylogeneticsStructural bioinformatics | Short | Closed | Department of Parasites and Insect Vectors | |
mechanism of toxin production by Klesiella pneumoniae | R. TOURNEBIZE | Genome assemblyVariant analysis | Short | Awaiting Publication | Department of Cell Biology & Infection | |
secretome analysis of human intestinal cells during shigella invasion | n. sauvonnet | Statistics | Closed | Department of Cell Biology & Infection | ||
Development and use of statistical programs to analyze RNA-Seq data produced at the Transcriptome & Epigenome Platform | J. Coppée | Differential analysisRNA-seqSingle CellStatistics | Mis-a-disposition | Closed | Department of Genome & Genetics | |
Development and use of statistical programs to analyze RNA-Seq data produced at the Transcriptome & Epigenome Platform | J. Coppée | Differential analysismiRNAStatistics | Mis-a-disposition | Closed | Department of Genome & Genetics | |
Analysis of sequencing data from a Leishmania donovani cosmid library | P. Pescher | Sequence analysis | Medium | Closed | Department of Parasites and Insect Vectors | |
Mining the Plasmodium genome to identify novel blood stage antigens for use as malaria vaccine candidates | C. Chitnis | Genomics | Declined | Department of Parasites and Insect Vectors | ||
Development of a bioinformatics workflow dedicated to the analysis of the viral metagenome: from NGS raw data to the identification of novel viruses | L. Dacheux | Shotgun metagenomicsTaxonomy | Short | Closed | Department of Infection & Epidemiology | |
individual-nucleotide resolution Cross-Linking and ImmunoPrecipitation (iCLIP) of Argonaute proteins in C. elegans | G. CECERE | RNA-seq | Declined | Department of Developmental & Stem Cell Biology | ||
Reconstruction of archaeal genomes from environmental metagenomic data | s. gribaldo | Shotgun metagenomics | Long | Closed | Department of Microbiology | |
Systems Biology of Cell Infection by the Bacterial Pathogen Listeria monocytogenes | J. PIZARRO-CERDA | miRNASystems Biology | Medium | Closed | Department of Cell Biology & Infection | |
Listeriomics - Development of a web platform for visualization and analysis of Listeria omics data | P. Cossart | Data VisualizationGenomicsProteomicsTool DevelopmentTranscriptomics | Medium | Closed | Department of Cell Biology & Infection | |
Host Range Database | L. Debarbieux | Data Visualization | Declined | Department of Microbiology | ||
Determination of SNPs in 6 genomes of Leptospira kirschneri serovar grippotyphosa | P. hugon | Data VisualizationVariant analysis | Short | Closed | Department of Microbiology | |
Factors determining HIV seeding in CD4+ T cell subpopulations | S. Asier | Differential analysisStatistics | Medium | Closed | Department of Virology | |
ANALYSIS OF TRANSCRIPTIONNAL MODULATIONS INDUCED IN C57BL/6 BONE-MARROW DERIVED MACROPHAGES INFECTED BY LEISHMANIA AMAZONENSIS IN PRESENCE OR ABSENCE OF INFLAMMASOME-ACTIVATING CONDITIONS | H. LECOEUR | Differential analysisRNA-seq | Short | Closed | Department of Parasites and Insect Vectors | |
ANALYSIS OF TRANSCRIPTIONAL MODULATIONS RELATED TO CELL DEATH PROCESSES IN MURINE BONE-MARROW DERIVED MACROPHAGES AND DENDRITIC CELLS INFECTED BY LEISHMANIA AMAZONENSIS | H. Lecoeur | Differential analysisMicroarrayStatistics | Short | Closed | Department of Parasites and Insect Vectors | |
Transciptomic analysis of dendritic cell response during Lassa virus infection | J. Schaeffer | Differential analysisTranscriptomics | Closed | Department of Virology | ||
Interactions and dynamics of fungal and bacterial microbiome in healthy people | M. Bougnoux | Shotgun metagenomics | Short | Closed | Department of Mycology | |
Massive amplification at an unselected locus accompanies complex chromosomal rearrangements in yeast | B. DUJON | Variant analysis | Mis-a-disposition | Closed | Department of Genome & Genetics | |
SNP based analysis of French Bordetella pertussis isolates: comparison of isolates producing all the vaccine antigens to isolates producing only some of them. | V. Bouchez | Comparative GenomicsVariant analysis | Medium | Closed | Department of Infection & Epidemiology | |
Bio-informatics support for the LeiSHield project | G. Spaeth | Sequence analysis | Long | Closed | Department of Parasites and Insect Vectors | |
Immunovax | G. Barba Spaeth | Statistics | Short | Declined | Department of Virology | |
RNAseq analysis-gene ontology enrichment Clostridium tetani | D. Chapeton Montes | Differential analysisStatistics | Medium | Closed | Department of Microbiology | |
Meta-analysis of dengue transcriptomic data | I. Nikolayeva | Systems Biology | Medium | Closed | Department of Genome & Genetics | |
Antibody sequencing by MS: Automation of analysis | B. Saunier | ProteomicsSequence analysisTool Development | Long | In Progress | Department of Virology | |
The contribution of ecological variation to the microbiome of Ae. aegypti | L. Dickson | Shotgun metagenomics | Short | Closed | Department of Genome & Genetics | |
A long-term mission for an assigned CIH-embedded bioinformatician to provide bioinformatic support to the CIH community | M. Hasan | Differential analysisMicroarrayRNA-seqSequence analysisSingle CellSystems BiologyTool Development | Mis-a-disposition | In Progress | Department of Immunology | |
Variant effects on influenza virus proteins | C. Barbezange | Sequence analysisStatisticsVariant analysis | Medium | Closed | Department of Virology | |
Comparative genomic and phylogenetic analysis of 14 Clostridium tetani strains | D. Chapeton Montes | Comparative GenomicsPhylogenetics | Short | Closed | Department of Microbiology | |
Un workflow pour l'analyses des polymorphismes des souches de grippe saisonnier. | V. Enouf | Sequence analysisTool DevelopmentVariant analysis | Short | Closed | Department of Virology | |
L'analyses phylogénétique par séquence protéique, temporal et géographical | N. Naffakh | Phylogenetics | Long | Closed | Department of Virology | |
Analyses fonctionnel des protéines humains de type ubiquitin. | C. Demeret | ProteomicsSequence analysis | Medium | Closed | Department of Virology | |
Analyses protéine-protéine interactions | Y. Jacob | ProteomicsStructural bioinformatics | Mis-a-disposition | Closed | Department of Virology | |
Deciphering dormancy in Cryptocococcus neoformans | h. benjamin | Statistics | Short | Closed | Department of Mycology | |
Variant detection on NGS data | L. DEBARBIEUX | Variant analysis | Medium | Closed | Department of Microbiology | |
The Physiological Consequences of Altering Bacterial Cell Wall Synthesis | J. Berry | AnnotationDifferential analysisGenomicsProteomicsTranscriptomics | Medium | Closed | Department of Microbiology | |
Genome On Rails | E. Rocha | Comparative Genomics | Declined | Department of Genome & Genetics | ||
Deciphering the global response of human macrophages against M. tuberculosis | L. Tailleux | GenomicsStatistics | Medium | Closed | Department of Genome & Genetics | |
Re-annotation and HTseq analysis of the Sudanese L. donovani strain LdS1 | G. Spaeth | Sequence analysis | Long | Closed | Department of Parasites and Insect Vectors | |
Do faecal microbiome phages facilitate antibiotic resistance? | E. Rocha | Shotgun metagenomics | Coaching | Closed | Department of Genome & Genetics | |
Transcriptome du fibroblaste cutané humain: une approche pré-expérimentale | B. David-Watine | Differential analysis | Declined | Department of Cell Biology & Infection | ||
Mise a disposition d'un(e) bioinformaticien(ne) du hub pour les analyses bioinformatiques du transcriptome et de l epigenome | J. Coppee | ATAC-seqChIP-seqNon coding RNARNA-seqSingle Cell | Mis-a-disposition | Closed | Department of Genome & Genetics | |
Horizontal gene transfer in mycobacteria | E. Boritsch | Data VisualizationGenome assemblyVariant analysis | Long | Closed | Department of Genome & Genetics | |
Yeast comparative genomics | B. Dujon | AnnotationComparative GenomicsGenome assemblyVariant analysis | Long | Closed | Department of Genome & Genetics | |
N/A | N. Rachidi | PhylogeneticsSequence analysis | Short | Closed | Department of Parasites and Insect Vectors | |
sequence conservation in the vicinity of Gli3 binding sites in the mouse genome | R. Benoit | Sequence analysis | Short | Closed | Other | |
Pasteur International Bioresources Network (PIBnet) bioinformatics: whole-genome sequencing of microbial agents for disease surveillance, outbreak investigation, epidemiology and population biology | S. BRISSE | Genome assemblyPhylogeneticsStatisticsTaxonomyTool DevelopmentVariant analysis | Embedded | In Progress | Department of Genome & Genetics | |
A reference panel of dengue vector genomes | L. Lambrechts | AnnotationGenome assemblyTool Development | Medium | Closed | Department of Genome & Genetics | |
How ribosomal protein gene position impacts in the genome evolution during a long term evolution experiment. | A. SOLER | Genome assemblyGenome rearrangementsVariant analysis | Medium | Awaiting Publication | Department of Genome & Genetics | |
Regulation by phase variation and attenuation: looking for leader peptides containing repeats in the intergenic regions of streptococcal genomes | S. Dramsi | AnnotationPhylogenetics | Medium | Closed | Department of Microbiology | |
MicrocystOmics | C. Pancrace | Data VisualizationGenomicsStatisticsTranscriptomics | Medium | Closed | Department of Microbiology | |
Updating the Topo IB gene tree | P. Forterre | Data VisualizationPhylogeneticsTaxonomy | Medium | Closed | Department of Microbiology | |
Assemblage de novo d'une souche d'E. coli | L. DEBARBIEUX | Genome assembly | Short | Closed | Department of Microbiology | |
A program to identify integrons, attC sites and gene cassettes | E. Rocha | Tool Development | Medium | Closed | Department of Genome & Genetics | |
Identification of Transcription Start Sites and small RNAs in Leptospira interrogans by transcriptome analysis | M. Picardeau | Differential analysismiRNATranscriptomics | Medium | Closed | Department of Microbiology | |
Role of SUMO, a new epigenetic mark, in stress response | A. DEJEAN | ATAC-seqChIP-seqDifferential analysisEpigenomicsRNA-seqTranscriptomics | Long | Closed | Department of Cell Biology & Infection | |
INNOV DIAG HPV | P. Pérot | Differential analysisStatisticsTool Development | Medium | Closed | Department of Cell Biology & Infection | |
Influence of chromatin dynamics on genomic stability during replication | L. Lazar Stefanita | Data VisualizationVariant analysis | Medium | Closed | Department of Genome & Genetics | |
Transcriptome analyis of two human T cell subsets | F. MICHEL | Diff. Expression | Declined | Department of Immunology | ||
a web interface for MacSyFinder (a tool to detect macromolecular systems in genomes). | E. Rocha | Tool Development | Medium | Closed | Department of Genome & Genetics | |
Analysis of host epitranscriptional modifications upon colonisation with commensals and infection by bacterial pathogens | P. Cossart | ChIP-seqDifferential analysis | Long | Closed | Department of Cell Biology & Infection | |
Deconvolution of synthetic homologous chromosomes in 3D | R. Koszul | Chromatin conformation capture | Short | Closed | Department of Genome & Genetics | |
Analyse de données de microarray | Y. Wei | Differential analysisMicroarrayStatistics | Medium | Closed | Department of Virology | |
Characterization of an unusual Leishmania major HSP70-related protein | G. Spaeth | Data VisualizationPhylogeneticsTool Development | Short | Closed | Department of Parasites and Insect Vectors | |
Single cell gene expression profiling of HIV-specific CD8+ T cells associated with HIV control | A. Saez-Cirion | Differential analysisSingle Cell | Long | Closed | Department of Virology | |
Implementation of a statistical tool for HDX-MS data analyses | S. BRIER | Proteomics | Long | Closed | Department of Structural Biology & Chemistry | |
Analyse de séquence 16S | L. DEBARBIEUX | Taxonomy | Medium | Closed | Department of Microbiology | |
Analyse de données de miRNA | F. Michel | miRNA | Short | Closed | Department of Immunology | |
Methods to identify and characterize orthologs of genes encoding small proteins | F. Norel | Phylogenetics | Long | Closed | Department of Microbiology | |
Analyses of SNP diversity of Legionella pneumophila strains | C. Buchrieser | Comparative GenomicsData VisualizationVariant analysis | Medium | Closed | Department of Genome & Genetics | |
Interactive web interfaces and Analysis Tools of Bacterial NGS data for Postgenomics Life Scientist | M. Monot | Tool Development | Declined | Department of Microbiology | ||
Genomic analyses of E. coli strains | A. Wessel | Genome assemblyVariant analysis | Medium | Closed | Department of Microbiology | |
Molecular analysis of muscle stem cells | S. Tajbakhsh | Differential analysisGenomicsProteomicsTranscriptomics | Long | Closed | Department of Developmental & Stem Cell Biology | |
Transfert annotations | C. Bouchier | Annotation | Short | Closed | Department of Genome & Genetics | |
Identification of new cellular parameters involved in HIV-1 integration selectivity | M. LAVIGNE | Sequence analysisStatisticsStructural bioinformatics | Medium | Closed | Department of Virology | |
Formatage et soumission de données à l'EBI | G. JANBON | Databank submission | Short | Closed | Department of Mycology | |
Détection de variants dans des données NGS (miSeq) de phage | L. DEBARBIEUX | Variant analysis | Short | Closed | Department of Microbiology | |
Whole-genome sequencing of microbial agents for disease surveillance, outbreak investigation, epidemiology and population biology | S. Brisse | Genome assemblyPhylogeneticsStatisticsTaxonomyTool DevelopmentVariant analysis | Long | Closed | Department of Genome & Genetics | |
Fast and accurate implementation of the raw read coverage homogenization technique | A. Criscuolo | Tool Development | Medium | Awaiting Publication | Centers | |
Systems wide analysis of amastigote and promastigote stages of Leishmania donovani | P. Pescher | Data VisualizationDifferential analysisGenomicsMetabolomicsProteomicsTranscriptomics | Long | Closed | Department of Parasites and Insect Vectors | |
Study of lncRNAs in Cryptococcus neoformans | G. Janbon | Differential analysisSequence analysisTranscriptome assemblyTranscriptomics | Long | Closed | Department of Mycology | |
gRNA library design | P. Navarro Gil | CRISPRSequence analysis | Medium | Closed | Department of Developmental & Stem Cell Biology | |
Novel regulators of cell wall maintenance in Aspergillus fumigatus | S. Raj | Transcriptomics | Declined | Department of Mycology | ||
Host microbiota modification by the pathogen Listeria monocytogenes | J. Pizarro-Cerda | Shotgun metagenomics | Medium | Closed | Department of Cell Biology & Infection | |
Mapping of research themes and fields of expertise available in the Institut Pasteur international Network | A. Fontanet | Data VisualizationTool Development | Medium | Closed | Department of Infection & Epidemiology | |
Development of analysis tools for mate-paired data. | C. Axel | Declined | Department of Genome & Genetics | |||
Gene regulation in yeast quiescence | G. Badis-Breard | Transcriptomics | Declined | Department of Genome & Genetics | ||
viral evolution around Ebola Treatment Centre in Macenta and according to disease outcomes | C. Picard | Genome assemblyVariant analysis | Short | Closed | Department of Virology | |
Transcriptome of Human sperm | D. Marie-Charlotte | RNA-seq | Medium | Closed | Department of Developmental & Stem Cell Biology | |
Systems Biology Data Management and Analysis Platform (SYSMAP) | B. Schwikowski | Tool Development | Declined | Department of Genome & Genetics | ||
Impact des facteurs épidemiologiques et strategiques sur l'incidence du paludisme à Thiès | A. SOW | Declined | Other | |||
HIghthroughput CRISPR-Cas9 screen in bacteria | D. Bikard | CRISPRDifferential analysis | Long | Closed | Department of Microbiology | |
MacSyFinder development: models data structure | E. Rocha | Tool Development | Closed | Department of Genome & Genetics | ||
Genome-wide replication lanscape of Candida glabrata | G. Richard | Sequence analysis | Long | Closed | Department of Genome & Genetics | |
Phylogenetic analysis of the Leishmania HSP70 protein family | G. Spaeth | Data VisualizationPhylogenetics | Short | Closed | Department of Parasites and Insect Vectors | |
Characterisation of skeletal muscle stem cell properties in distinct physiological states | F. Pala | Differential analysisStatistics | Short | Closed | Department of Developmental & Stem Cell Biology | |
search for transcrition factors upregulating Tgfb1 expression in FHL2-/- cells | Y. Wei | Annotation | Short | Closed | Department of Virology | |
Characterization of microevolution in Candida albicans isolates | C. d'Enfert | Comparative GenomicsData VisualizationGenome assemblyVariant analysis | Long | Closed | Department of Mycology | |
Candida albicans population genomics | C. d'Enfert | Genome assemblyPhylogeneticsTool DevelopmentVariant analysis | Long | In Progress | Department of Mycology | |
Evolutionary relationships between giant viruses and eukaryotes | P. Forterre | PhylogeneticsSequence analysis | Long | Closed | Department of Microbiology | |
An automatic pipeline to call SNPs from RNA-seq reads | V. Raquin | Variant analysis | Medium | Closed | Department of Genome & Genetics | |
développement d'un logiciel danalyse sur la base de spade et visne | P. Commere | Sofware development and engineering | Declined | Other | ||
Regulation of HIV replication by cellular DNA topology | M. Lavigne | Structural bioinformatics | Short | Declined | Department of Virology | |
Genomic approach for the identification of new targets of antimycobacterial drugs | M. BUCHIERI | Variant analysis | Short | Closed | Department of Genome & Genetics | |
Mapping the cell surface signature of the developing mouse heart | M. Valente | Differential analysisStatistics | Short | Closed | Department of Immunology | |
Sequence alignment – implement algorithm in C | C. MacPherson | Algorithmics | Declined | Other | ||
Image-based siRNA and drug screens of infection by the pathogen Listeria monocytogenes | J. Pizarro-Cerda | Statistics | Medium | Declined | Department of Cell Biology & Infection | |
Linking Phenotype to genotype in C. neoformans clinical isolates | A. Alexandre | StatisticsVariant analysis | Medium | Closed | Department of Mycology |