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Project #14231
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#14231 : Implementation of the ViroScreen workflow in Galaxy
Topics :
Organisms :
Group :
Name of Applicant : Laurent Dacheux
Date of application : 25-09-2019
Unit : Lyssavirus Dynamics and Host Adaptation
Location : 22-01-20A (Lwoff, 1er étage, pièce 20A)
Phone : +33 1 40 61 33 03
@ Mail : laurent.dacheux@pasteur.fr
@ PI-Mail : herve.bourhy@pasteur.fr

Project context and summary :

The ViroScreen workflow is a bioinformatic pipeline dedicated the the analysis of NGS metagenomic data, especially in the field of virology (virome analysis). The aim of the project is to implement this bioinformatic workflow, developed with Corinne Maufrais (Bioinformatics and Biostatistics Hub), in Galaxy, to make it easly accessible to the scientific community, in easy-to-use way.


Related team publications :
Dacheux L, Dommergues L, Chouanibou Y, Doméon L, Schuler C, Bonas S, Luo D, Maufrais C, Cetre-Sossah C, Cardinale E, Bourhy H, Métras R. Co-circulation and characterization of novel African arboviruses (genus Ephemerovirus) in cattle, Mayotte island, Indian Ocean, 2017. Transbound Emerg Dis. 2019 Aug 7. doi: 10.1111/tbed.13323. [Epub ahead of print] PubMed PMID: 31390479
Dacheux L, Cervantes-Gonzalez M, Guigon G, Thiberge JM, Vandenbogaert M, Maufrais C, Caro V, Bourhy H. A preliminary study of viral metagenomics of French bat species in contact with humans: identification of new mammalian viruses. PLoS One. 2014 Jan 29;9(1):e87194. doi: 10.1371/journal.pone.0087194. eCollection 2014. PubMed PMID: 24489870; PubMed Central PMCID: PMC3906132.
Joffret ML, Bouchier C, Grandadam M, Zeller H, Maufrais C, Bourhy H, Despres P, Delpeyroux F, Dacheux L. Genomic characterization of Sebokele virus 1 (SEBV1) reveals a new candidate species among the genus Parechovirus. J Gen Virol. 2013 Jul;94(Pt 7):1547-53. doi: 10.1099/vir.0.053157-0. Epub 2013 Apr 17. PubMed PMID: 23596267.
Service Delivery
Project Manager : fabien.mareuil@pasteur.fr
Project Type : Short
Status : Closed


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