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Project #2254
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#2254 : MacSyFinder development: models data structure
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Organisms :
Group :
Name of Applicant : Eduardo Rocha
Date of application : 23-06-2015
Unit : Microbial Evolutionary Genomics
Location : Fran├žois Jacob – 6eme
Phone : 3353
@ Mail : eduardo.rocha@pasteur.fr

Project context and summary :

Modification of MacSyFinder models and profiles data structure to facilitate models distribution, and integration in the Mobyle platform. This consists in organizing the way XML models and HMM profiles of given system or set of systems in order to allow running the detection of all the macromolecular systems in a given folder. This will also ensure that the profiles are always distributed with the appropriate definitions of the systems, and thus avoid collisions of profiles name.


Related team publications :
Abby et al, PLosO, 2014, 9(10): e110726. doi:10.1371/journal.pone.0110726
Oliveira et al, NAR, 2014, 42(16):10618-31. doi: 10.1093/nar/gku734
Service Delivery
Project Manager : bertrand.neron@pasteur.fr
Status : In Progress


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