Project #3905
Step by step one goes very far

Logged as guest

Go Back to Project List
#3905 : Development and use of statistical programs to analyze RNA-Seq data produced at the Transcriptome & Epigenome Platform
Topics :
Organisms :
Group :
Name of Applicant : Jean-Yves Coppée
Date of application : 16-02-2016
Unit : Transcriptome and EpiGenome
Location : Biotpop 2nd floor
Phone : 0145688651
@ Mail :

Project context and summary :

The Transcriptome & Epigenome Platform is dedicated to the development and use of high throughput approaches for transcriptomics and epigenomics studies. The platform is accessible to any research team from the Pasteur Institute (80% of the projects) as well as from outside. It is involved (most often as collaborator) in several projects funded by the ANR, Microbes and Brain, ERANET and by the Pasteur Institute in the framework of the PTR programs. Next Generation Sequencing (NGS) based on the Illumina technology (HiSeq 2000/2500 sequencers) is used to perform RNA-sequencing experiments for which a large amount of data is generated. After a first step involving bioinformatics, specific statistical methods must be used be analyze rigorously the data. These analyses are most often performed by the statistician(s) of the platform. They are also in charge of bibliographical survey activity.

Related team publications :
RNase J depletion leads to massive changes in mRNA abundance in Helicobacter pylori. Redko Y, Galtier E, Arnion H, Darfeuille F, Sismeiro O, Coppée JY, Médigue C, Weiman M, Cruveiller S, De Reuse H. RNA Biol. 2016
Overexpression of the Heterochromatinization Factor BAHD1 in HEK293 Cells Differentially Reshapes the DNA Methylome on Autosomes and X Chromosome. Libertini E, Lebreton A, Lakisic G, Dillies MA, Beck S, Coppée JY, Cossart P, Bierne H. Front Genet. 2015
Normal and Cystic Fibrosis Human Bronchial Epithelial Cells Infected with Pseudomonas aeruginosa Exhibit Distinct Gene Activation Patterns. Balloy V, Varet H, Dillies MA, Proux C, Jagla B, Coppée JY, Tabary O, Corvol H, Chignard M, Guillot L. PLoS One. 2015
Service Delivery
Project Manager :
Project Type : Mis-a-disposition
Status : Closed
Global Satisfaction for this application : Excellent (5/5)

Go Back to Project List

  • Drop files here or
    Accepted file types: fasta, fa, gbk, jpg, jpeg, png, pdf, txt, ppt, pptx, doc, docx, zip, gz, ods, odt, odp, xlsx, xls, csv, r, tsv, html.