Project

Project #7419
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Topics :

Galaxy Structural bioinformatics Web development

Organisms :

Non applicable

Group :

WINTER

Name of Applicant : Benjamin Bardiaux
Date of application : 18-11-2016
Unit : Structural Bioinformatics
Location : 64-1-2
Phone : 3684
@ Mail : bardiaux@pasteur.fr
@ PI-Mail : nilges@pasetur.fr

Project context and summary :

The ARIA (Ambiguous Restraints for Iterative Assignment) software, developed at the Structural Bioinformatics Unit, automatizes the treatment of NMR data and protein structure calculation by molecular dynamics simulation. To enhance the visibility of the software, it is necessary to develop a new web interface where users will be able to easily manage their data, perform calculations and analyze the results of the ARIA calculations.

Related team publications :

Mareuil F, Blanchet C, Malliavin TE, Nilges M. Grid computing for improving conformational sampling in NMR structure calculation. Bioinformatics. 2011 Jun 15;27(12):1713-4.

Rieping W, Habeck M, Bardiaux B, Bernard A, Malliavin TE, Nilges M. ARIA2: automated NOE assignment and data integration in NMR structure calculation. Bioinformatics. 2007 Feb 1;23(3):381-2

Mareuil F, Malliavin TE, Nilges M, Bardiaux B. Improved reliability, accuracy and quality in automated NMR structure calculation with ARIA. J Biomol NMR. 2015 Aug;62(4):425-38. doi: 10.1007/s10858-015-9928-5.

Project Manager : fabien.mareuil@pasteur.fr
Project Type : Long
Status : Awaiting Publication

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