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Project #7901
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#7901 : Automatic detection of antibiotic resistance genes
Topics :
Organisms :
Group :
Name of Applicant : Olivier Chesneau
Date of application : 17-02-2017
Unit : Other
Location : Duclaux building, Fourneau part, 2nd floor, 30A room
Phone : 0140613285
@ Mail : olivier.chesneau@pasteur.fr
@ PI-Mail : chantal.bizet@pasteur.fr

Project context and summary :

Linked with the project #7283 managed by Thomas Bigot, this proposal aims to detect antibiotic resistance genes in whole-genome sequence data of the bacteria deposited and stored at CIP. The CARD library (http://arpcard.mcmaster.ca) would be used to screen for common acquired resistance genes. Detection of point mutations in house-keeping genes and/or transporters would require specific queries from a fasta file continuously implemented by myself.


Related team publications :
doi: 10.1128/AAC.02797-13
Service Delivery
Project Manager : thomas.bigot@pasteur.fr
Project Type : Short
Status : In Progress


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