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Publication – Bioinformatics
Sequanix: A Dynamic Graphical Interface for Snakemake Workflows. – Desvillechabrol Dimitri, Legendre Rachel, Rioualen Claire, Bouchier Christiane, van Helden Jacques, Kennedy Sean, Cokelaer Thomas

Summary We designed a PyQt graphical user interface – Sequanix – aimed at democratizing the use of Snakemake pipelines in the NGS space and beyond. By default, Sequanix includes Sequana NGS pipelines (Snakemake format) (http://sequana.readthedocs.io), and is also capable of loading any external Snakemake pipeline. New users can easily, visually, edit…
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Publication – PLOS Neglected Tropical Diseases
Individual co-variation between viral RNA load and gene expression reveals novel host factors during early dengue virus infection of the Aedes aegypti midgut – Vincent Raquin, Sarah Hélène Merkling, Valérie Gausson, Isabelle Moltini-Conclois, Lionel Frangeul, Hugo Varet, Marie-Agnès Dillies, Maria-Carla Saleh, Louis Lambrechts

Dengue virus (DENV) causes more human infections than any other mosquito-borne virus. The current lack of antiviral strategies has prompted genome-wide screens for host genes that are required for DENV infectivity. Earlier transcriptomic studies that identified DENV host factors in the primary vector Aedes aegypti used inbred laboratory colonies and/or…
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Publication – Journal of Crohn’s and Colitis
Characteristics of Fecal Microbiota in Pediatric Crohn’s Disease and Their Dynamic Changes During Infliximab Therapy. – Yizhong Wang, Xuefeng Gao, Amine Ghozlane, Hui Hu, Xiaolu Li, Yongmei Xiao, Dan Li, Guangjun Yu, Ting Zhang

BACKGROUND: Crohn’s disease [CD] is known to be associated with gut microbial dysbiosis. Infliximab [IFX] is increasingly used to treat pediatric CD, however it is not clear how gut microbiota is modified during IFX treatment. The aim of this study was to characterize the fecal microbiota community composition in pediatric CD…
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Seminar
Thu 31 May 2018 at 02:00 pm, Hervé Abdi will talk about TBA (Multivariate statistical analysis)

TBA (Multivariate statistical analysis)…
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Seminar
Thu 17 May 2018 at 02:00 pm, Heather Carlson will talk about TBA (Incorporating protein flexibility into the drug design process)

TBA (Incorporating protein flexibility into the drug design process)…
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Seminar
Thu 19 Apr 2018 at 02:00 pm, Niko Beerenwinkel will talk about TBA (Mathematical models of complex biosystems)

TBA…
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Training
Starting Thu 5 Apr 2018 at 02:00 pm, Emmanouil Dermitzakis will organize TBA (Functional population genomics and genetics of complex traits)

TBA…
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Seminar
Thu 22 Mar 2018 at 02:00 pm, Jukka Corander will talk about TBA (Bayesian Statistics)

TBA…
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Seminar
Thu 8 Mar 2018 at 02:00 pm, Amos Bairoch will talk about Some lessons learned during 30 years of biocuration activities

TBA…
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Seminar
Thu 22 Feb 2018 at 02:00 pm, Gaundenz Danuser will talk about TBA (Computer vision applied to cell biology)

TBA (Computer vision applied to cell biology)…
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