C3BI Publications


61 publications in 2018

Abdollahi N, Albani A, Anthony E, Baud A, Cardon M, Clerc R, Czernecki D, Conte R, David L, Delaune A, Djerroud S, Fourgoux P, Guiglielmoni N, Laurentie J, Lehmann N, Lochard C, Montagne R, Myrodia V, Opuu V, Parey E, Polit L, Privé S, Quignot C, Ruiz-Cuevas M, Sissoko M, Sompairac N, Vallerix A, Verrecchia V, Delarue M, Guérois R, Ponty Y, Sacquin-Mora S, Carbone A, Froidevaux C, Le Crom S, Lespinet O, Weigt M, Abboud S, Bernardes J, Bouvier G, Dequeker C, Ferré A, Fuchs P, Lelandais G, Poulain P, Richard H, Schweke H, Laine E, Lopes A. 2018. Meet-U: Educating through research immersion. PLoS Comput Biol. 14:e1005992. doi:10.1371/journal.pcbi.1005992.
Ali ST, Wu P, Cauchemez S, He D, Fang VJ, Cowling BJ, Tian L. 2018. Ambient ozone and influenza transmissibility in Hong Kong. Eur Respir J. 51. doi:10.1183/13993003.00369-2018.
Aristov A, Lelandais B, Rensen E, Zimmer C. 2018. ZOLA-3D allows flexible 3D localization microscopy over an adjustable axial range. Nat Commun. 9:2409. doi:10.1038/s41467-018-04709-4.
Aschard H, Spiegelman D, Laville V, Kraft P, Wang M. 2018. A test for gene-environment interaction in the presence of measurement error in the environmental variable. Genetic Epidemiology. 42:250–264. doi:10.1002/gepi.22113.
Batut B, Hiltemann S, Bagnacani A, Baker D, Bhardwaj V, Blank C, Bretaudeau A, Brillet-Guéguen L, Čech M, Chilton J, Clements D, Doppelt-Azeroual O, Erxleben A, Freeberg MA, Gladman S, Hoogstrate Y, Hotz H-R, Houwaart T, Jagtap P, Larivière D, Le Corguillé G, Manke T, Mareuil F, Ramírez F, Ryan D, Sigloch FC, Soranzo N, Wolff J, Videm P, Wolfien M, Wubuli A, Yusuf D, Galaxy Training Network, Taylor J, Backofen R, Nekrutenko A, Grüning B. 2018. Community-Driven Data Analysis Training for Biology. Cell Syst. 6:752-758.e1. doi:10.1016/j.cels.2018.05.012.
Bernal-Bayard J, Gomez-Valero L, Wessel A, Khanna V, Bouchier C, Ghigo J-M. 2018. Short genome report of cellulose-producing commensal Escherichia coli 1094. Stand Genomic Sci. 13:13. doi:10.1186/s40793-018-0316-0.
Boettcher M, Tian R, Blau JA, Markegard E, Wagner RT, Wu D, Mo X, Biton A, Zaitlen N, Fu H, McCormick F, Kampmann M, McManus MT. 2018. Dual gene activation and knockout screen reveals directional dependencies in genetic networks. Nature Biotechnology. 36:170–178. doi:10.1038/nbt.4062.
Bouchez V, Guglielmini J, Dazas M, Landier A, Toubiana J, Guillot S, Criscuolo A, Brisse S. 2018. Genomic Sequencing of Bordetella pertussis for Epidemiology and Global Surveillance of Whooping Cough. Emerging Infect Dis. 24:988–994. doi:10.3201/eid2406.171464.
Carissimo G, Pain A, Belda E, Vernick KD. 2018. Highly focused transcriptional response of Anopheles coluzzii to O’nyong nyong arbovirus during the primary midgut infection. BMC Genomics. 19. doi:10.1186/s12864-018-4918-0. [accessed 2018 Jul 11]. https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-018-4918-0.
Chatzou M, Floden EW, Di Tommaso P, Gascuel O, Notredame C, Halanych K. Generalized Bootstrap Supports for Phylogenetic Analyses of Protein Sequences Incorporating Alignment Uncertainty. Syst Biol. doi:10.1093/sysbio/syx096. [accessed 2018 May 31]. https://academic.oup.com/sysbio/advance-article/doi/10.1093/sysbio/syx096/4948750.
Cokelaer T, Chen E, Iorio F, Menden MP, Lightfoot H, Saez-Rodriguez J, Garnett MJ. 2018. GDSCTools for mining pharmacogenomic interactions in cancer. Bioinformatics. 34:1226–1228. doi:10.1093/bioinformatics/btx744.
Cortes MC, Cauchemez S, Lefrancq N, Luby SP, Jahangir Hossain M, Sazzad HMS, Rahman M, Daszak P, Salje H, Gurley ES. 2018. Characterization of the Spatial and Temporal Distribution of Nipah Virus Spillover Events in Bangladesh, 2007-2013. J Infect Dis. 217:1390–1394. doi:10.1093/infdis/jiy015.
Cossé MM, Barta ML, Fisher DJ, Oesterlin LK, Niragire B, Perrinet S, Millot GA, Hefty PS, Subtil A. 2018. The Loss of Expression of a Single Type 3 Effector (CT622) Strongly Reduces Chlamydia trachomatis Infectivity and Growth. Front Cell Infect Microbiol. 8:145. doi:10.3389/fcimb.2018.00145.
Courtejoie N, Salje H, Durand B, Zanella G, Cauchemez S. 2018 May 17. Using serological studies to reconstruct the history of bluetongue epidemic in French cattle under successive vaccination campaigns. Epidemics. doi:10.1016/j.epidem.2018.05.005.
Couvin D, Bernheim A, Toffano-Nioche C, Touchon M, Michalik J, Néron B, C. Rocha EP, Vergnaud G, Gautheret D, Pourcel C. 2018 May 22. CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins. Nucleic Acids Research. doi:10.1093/nar/gky425. [accessed 2018 May 29]. https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gky425/5001162.
Criscuolo A, Chesneau O, Clermont D, Bizet C. 2018. Draft Genome Sequence of the Fish Pathogen Flavobacterium columnare Genomovar III Strain PH-97028 (=CIP 109753). Genome Announcements. 6:e00222-18. doi:10.1128/genomeA.00222-18.
Cui L, Vigouroux A, Rousset F, Varet H, Khanna V, Bikard D. 2018. A CRISPRi screen in E. coli reveals sequence-specific toxicity of dCas9. Nat Commun. 9:1912. doi:10.1038/s41467-018-04209-5.
Dargél AA, Roussel F, Volant S, Etain B, Grant R, Azorin J-M, M’Bailara K, Bellivier F, Bougerol T, Kahn J-P, Roux P, Aubin V, Courtet P, Leboyer M, FACE-BD Collaborators, Kapczinski F, Henry C. 2018 May 15. Emotional hyper-reactivity and cardiometabolic risk in remitted bipolar patients: a machine learning approach. Acta Psychiatr Scand. doi:10.1111/acps.12901.
Desvillechabrol D, Legendre R, Rioualen C, Bouchier C, van Helden J, Kennedy S, Cokelaer T. 2018. Sequanix: a dynamic graphical interface for Snakemake workflows. Bioinformatics. 34:1934–1936. doi:10.1093/bioinformatics/bty034.
Dickson LB, Ghozlane A, Volant S, Bouchier C, Ma L, Vega-Rúa A, Dusfour I, Jiolle D, Paupy C, Mayanja MN, Kohl A, Lutwama JJ, Duong V, Lambrechts L. 2018. Diverse laboratory colonies of Aedes aegypti harbor the same adult midgut bacterial microbiome. Parasit Vectors. 11:207. doi:10.1186/s13071-018-2780-1.
Dobay, Maria Pamela, Pietrosemoli, Natalia. 2018. Optimized Protein–Protein Interaction Network Usage with Context Filtering. In: COMPUTATIONAL CELL BIOLOGY: methods and protocols. Vol. 1819. Louise von Stechow and Alberto Santos Delgado. S.l.: Springer Nature. (Methods in Molecular Biology).
Duval A, Obadia T, Martinet L, Boëlle P-Y, Fleury E, Guillemot D, Opatowski L, Temime L, I-Bird study group. 2018. Measuring dynamic social contacts in a rehabilitation hospital: effect of wards, patient and staff characteristics. Sci Rep. 8:1686. doi:10.1038/s41598-018-20008-w.
Fabre E, Zimmer C. 2018. From dynamic chromatin architecture to DNA damage repair and back. Nucleus. 9:161–170. doi:10.1080/19491034.2017.1419847.
Feitosa MF, Kraja AT, Chasman DI, Sung YJ, Winkler TW, Ntalla I, Guo X, Franceschini N, Cheng C-Y, Sim X, Vojinovic D, Marten J, Musani SK, Li C, Bentley AR, Brown MR, Schwander K, Richard MA, Noordam R, Aschard H, Bartz TM, Bielak LF, Dorajoo R, Fisher V, Hartwig FP, Horimoto ARVR, Lohman KK, Manning AK, Rankinen T, Smith AV, Tajuddin SM, Wojczynski MK, Alver M, Boissel M, Cai Q, Campbell A, Chai JF, Chen X, Divers J, Gao C, Goel A, Hagemeijer Y, Harris SE, He M, Hsu F-C, Jackson AU, Kähönen M, Kasturiratne A, Komulainen P, Kühnel B, Laguzzi F, Luan J, Matoba N, Nolte IM, Padmanabhan S, Riaz M, Rueedi R, Robino A, Said MA, Scott RA, Sofer T, Stančáková A, Takeuchi F, Tayo BO, van der Most PJ, Varga TV, Vitart V, Wang Y, Ware EB, Warren HR, Weiss S, Wen W, Yanek LR, Zhang W, Zhao JH, Afaq S, Amin N, Amini M, Arking DE, Aung T, Boerwinkle E, Borecki I, Broeckel U, Brown M, Brumat M, Burke GL, Canouil M, Chakravarti A, Charumathi S, Ida Chen Y-D, Connell JM, Correa A, de Las Fuentes L, de Mutsert R, de Silva HJ, Deng X, Ding J, Duan Q, Eaton CB, Ehret G, et al. 2018. Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries. PLoS ONE. 13:e0198166. doi:10.1371/journal.pone.0198166.
Garcia-Hermoso D, Criscuolo A, Lee SC, Legrand M, Chaouat M, Denis B, Lafaurie M, Rouveau M, Soler C, Schaal J-V, Mimoun M, Mebazaa A, Heitman J, Dromer F, Brisse S, Bretagne S, Alanio A. 2018. Outbreak of Invasive Wound Mucormycosis in a Burn Unit Due to Multiple Strains of Mucor circinelloides f. circinelloides Resolved by Whole-Genome Sequencing. Chowdhary A, editor. mBio. 9:e00573-18. doi:10.1128/mBio.00573-18.
Gruening B, Sallou O, Moreno P, da Veiga Leprevost F, Ménager H, Søndergaard D, Röst H, Sachsenberg T, O’Connor B, Madeira F, Dominguez Del Angel V, Crusoe MR, Varma S, Blankenberg D, Jimenez RC, Perez-Riverol Y. 2018. Recommendations for the packaging and containerizing of bioinformatics software. F1000Res. 7:742. doi:10.12688/f1000research.15140.1.
Grüning B, Dale R, Sjödin A, Chapman BA, Rowe J, Tomkins-Tinch CH, Valieris R, Köster J. 2018. Bioconda: sustainable and comprehensive software distribution for the life sciences. Nature Methods. 15:475–476. doi:10.1038/s41592-018-0046-7.
Guérin A, Kerner G, Marr N, Markle JG, Fenollar F, Wong N, Boughorbel S, Avery DT, Ma CS, Bougarn S, Bouaziz M, Béziat V, Della Mina E, Oleaga-Quintas C, Lazarov T, Worley L, Nguyen T, Patin E, Deswarte C, Martinez-Barricarte R, Boucherit S, Ayral X, Edouard S, Boisson-Dupuis S, Rattina V, Bigio B, Vogt G, Geissmann F, Quintana-Murci L, Chaussabel D, Tangye SG, Raoult D, Abel L, Bustamante J, Casanova J-L. 2018. IRF4 haploinsufficiency in a family with Whipple’s disease. Elife. 7. doi:10.7554/eLife.32340.
I-Bird study group, Duval A, Obadia T, Martinet L, Boëlle P-Y, Fleury E, Guillemot D, Opatowski L, Temime L. 2018. Measuring dynamic social contacts in a rehabilitation hospital: effect of wards, patient and staff characteristics. Scientific Reports. 8. doi:10.1038/s41598-018-20008-w. [accessed 2018 May 29]. http://www.nature.com/articles/s41598-018-20008-w.
Impens F, Rolhion N, Radoshevich L, Bécavin C, Duval M, Mellin J, García Del Portillo F, Pucciarelli MG, Williams AH, Cossart P. 2018 Jun 25. Author Correction: N-terminomics identifies Prli42 as a membrane miniprotein conserved in Firmicutes and critical for stressosome activation in Listeria monocytogenes. Nat Microbiol. doi:10.1038/s41564-018-0197-4.
Jeannin P, Chaze T, Giai Gianetto Q, Matondo M, Gout O, Gessain A, Afonso PV. 2018. Proteomic analysis of plasma extracellular vesicles reveals mitochondrial stress upon HTLV-1 infection. Sci Rep. 8:5170. doi:10.1038/s41598-018-23505-0.
Jiang X, O’Reilly PF, Aschard H, Hsu Y-H, Richards JB, Dupuis J, Ingelsson E, Karasik D, Pilz S, Berry D, Kestenbaum B, Zheng J, Luan J, Sofianopoulou E, Streeten EA, Albanes D, Lutsey PL, Yao L, Tang W, Econs MJ, Wallaschofski H, Völzke H, Zhou A, Power C, McCarthy MI, Michos ED, Boerwinkle E, Weinstein SJ, Freedman ND, Huang W-Y, Schoor NMV, Velde N van der, Groot LCPGM de, Enneman A, Cupples LA, Booth SL, Vasan RS, Liu C-T, Zhou Y, Ripatti S, Ohlsson C, Vandenput L, Lorentzon M, Eriksson JG, Shea MK, Houston DK, Kritchevsky SB, Liu Y, Lohman KK, Ferrucci L, Peacock M, Gieger C, Beekman M, Slagboom E, Deelen J, Heemst D van, Kleber ME, März W, Boer IH de, Wood AC, Rotter JI, Rich SS, Robinson-Cohen C, Heijer M den, Jarvelin M-R, Cavadino A, Joshi PK, Wilson JF, Hayward C, Lind L, Michaëlsson K, Trompet S, Zillikens MC, Uitterlinden AG, Rivadeneira F, Broer L, Zgaga L, Campbell H, Theodoratou E, Farrington SM, Timofeeva M, Dunlop MG, Valdes AM, Tikkanen E, Lehtimäki T, Lyytikäinen L-P, Kähönen M, Raitakari OT, Mikkilä V, Ikram MA, Sattar N, Jukema JW, Wareham NJ, Langenberg C, Forouhi NG, Gundersen TE, Khaw K-T, Butterworth AS, Danesh J, Spector T, et al. 2018. Genome-wide association study in 79,366 European-ancestry individuals informs the genetic architecture of 25-hydroxyvitamin D levels. Nature Communications. 9:260. doi:10.1038/s41467-017-02662-2.
Kim Y-M, Poline J-B, Dumas G. 2018 Jun 28. Experimenting with Reproducibility: a case study of Robustness in Bioinformatics. Gigascience. doi:10.1093/gigascience/giy077.
King BR, Samacoits A, Eisenhauer PL, Ziegler CM, Bruce EA, Zenklusen D, Zimmer C, Mueller F, Botten J. 2018. Visualization of Arenavirus RNA Species in Individual Cells by Single-Molecule Fluorescence In Situ Hybridization Suggests a Model of Cyclical Infection and Clearance during Persistence. J Virol. 92. doi:10.1128/JVI.02241-17.
Krin E, Pierlé SA, Sismeiro O, Jagla B, Dillies M-A, Varet H, Irazoki O, Campoy S, Rouy Z, Cruveiller S, Médigue C, Coppée J-Y, Mazel D. 2018. Expansion of the SOS regulon of Vibrio cholerae through extensive transcriptome analysis and experimental validation. BMC Genomics. 19. doi:10.1186/s12864-018-4716-8. [accessed 2018 May 29]. https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-018-4716-8.
Lanza VF, Baquero F, Martínez JL, Ramos-Ruíz R, González-Zorn B, Andremont A, Sánchez-Valenzuela A, Ehrlich SD, Kennedy S, Ruppé E, van Schaik W, Willems RJ, de la Cruz F, Coque TM. 2018. In-depth resistome analysis by targeted metagenomics. Microbiome. 6. doi:10.1186/s40168-017-0387-y. [accessed 2018 May 29]. https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-017-0387-y.
Laville V, Bentley AR, Privé F, Zhu X, Gauderman J, Winkler TW, Province M, Rao DC, Aschard H, CHARGE Gene-Lifestyle Interactions Working Group. 2018 May 3. VarExp: estimating variance explained by genome-wide GxE summary statistics. Stegle O, editor. Bioinformatics. doi:10.1093/bioinformatics/bty379. [accessed 2018 May 29]. https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/bty379/4992146.
Legrand M, Bachellier-Bassi S, Lee KK, Chaudhari Y, Tournu H, Arbogast L, Boyer H, Chauvel M, Cabral V, Maufrais C, Nesseir A, Maslanka I, Permal E, Rossignol T, Walker LA, Zeidler U, Znaidi S, Schoeters F, Majgier C, Julien RA, Ma L, Tichit M, Bouchier C, Dijck PV, Munro CA, d’Enfert C. 2018 Jul 6. Generating genomic platforms to study Candida albicans pathogenesis. Nucleic Acids Res. doi:10.1093/nar/gky594.
Lemoine F, Domelevo Entfellner J-B, Wilkinson E, Correia D, Dávila Felipe M, De Oliveira T, Gascuel O. 2018. Renewing Felsenstein’s phylogenetic bootstrap in the era of big data. Nature. 556:452–456. doi:10.1038/s41586-018-0043-0.
Lopez M, Kousathanas A, Quach H, Harmant C, Mouguiama-Daouda P, Hombert J-M, Froment A, Perry GH, Barreiro LB, Verdu P, Patin E, Quintana-Murci L. 2018. The demographic history and mutational load of African hunter-gatherers and farmers. Nat Ecol Evol. 2:721–730. doi:10.1038/s41559-018-0496-4.
Menichelli C, Gascuel O, Bréhélin L. 2018. Improving pairwise comparison of protein sequences with domain co-occurrence. Markel S, editor. PLOS Computational Biology. 14:e1005889. doi:10.1371/journal.pcbi.1005889.
Morel J-D, Paatero AO, Wei J, Yewdell JW, Guenin-Macé L, Van Haver D, Impens F, Pietrosemoli N, Paavilainen VO, Demangel C. 2018 Jun 18. Proteomics reveals scope of mycolactone-mediated Sec61 blockade and distinctive stress signature. Mol Cell Proteomics. doi:10.1074/mcp.RA118.000824.
Nevers A, Doyen A, Malabat C, Néron B, Kergrohen T, Jacquier A, Badis G. 2018 May 18. Antisense transcriptional interference mediates condition-specific gene repression in budding yeast. Nucleic Acids Research. doi:10.1093/nar/gky342. [accessed 2018 Jun 8]. https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gky342/4999236.
Nicholson AC, Gulvik CA, Whitney AM, Humrighouse BW, Graziano J, Emery B, Bell M, Loparev V, Juieng P, Gartin J, Bizet C, Clermont D, Criscuolo A, Brisse S, McQuiston JR. 2018. Revisiting the taxonomy of the genus Elizabethkingia using whole-genome sequencing, optical mapping, and MALDI-TOF, along with proposal of three novel Elizabethkingia species: Elizabethkingia bruuniana sp. nov., Elizabethkingia ursingii sp. nov., and Elizabethkingia occulta sp. nov. Antonie Van Leeuwenhoek. 111:55–72. doi:10.1007/s10482-017-0926-3.
Nikolayeva I, Bost P, Casademont I, Duong V, Koeth F, Prot M, Czerwinska U, Ly S, Bleakley K, Cantaert T, Dussart P, Buchy P, Simon-Lorière E, Sakuntabhai A, Schwikowski B. 2018. A Blood RNA Signature Detecting Severe Disease in Young Dengue Patients at Hospital Arrival. The Journal of Infectious Diseases. 217:1690–1698. doi:10.1093/infdis/jiy086.
Ouyang W, Aristov A, Lelek M, Hao X, Zimmer C. 2018. Deep learning massively accelerates super-resolution localization microscopy. Nature Biotechnology. 36:460–468. doi:10.1038/nbt.4106.
Patin E, Hasan M, Bergstedt J, Rouilly V, Libri V, Urrutia A, Alanio C, Scepanovic P, Hammer C, Jönsson F, Beitz B, Quach H, Lim YW, Hunkapiller J, Zepeda M, Green C, Piasecka B, Leloup C, Rogge L, Huetz F, Peguillet I, Lantz O, Fontes M, Di Santo JP, Thomas S, Fellay J, Duffy D, Quintana-Murci L, Albert ML, Milieu Intérieur Consortium. 2018. Natural variation in the parameters of innate immune cells is preferentially driven by genetic factors. Nat Immunol. 19:302–314. doi:10.1038/s41590-018-0049-7.
Piasecka B, Duffy D, Urrutia A, Quach H, Patin E, Posseme C, Bergstedt J, Charbit B, Rouilly V, MacPherson CR, Hasan M, Albaud B, Gentien D, Fellay J, Albert ML, Quintana-Murci L, Milieu Intérieur Consortium. 2018. Distinctive roles of age, sex, and genetics in shaping transcriptional variation of human immune responses to microbial challenges. Proc Natl Acad Sci USA. 115:E488–E497. doi:10.1073/pnas.1714765115.
Poupel O, Proux C, Jagla B, Msadek T, Dubrac S. 2018. SpdC, a novel virulence factor, controls histidine kinase activity in Staphylococcus aureus. PLoS Pathog. 14:e1006917. doi:10.1371/journal.ppat.1006917.
Privé F, Aschard H, Ziyatdinov A, Blum MGB. 2018 Mar 30. Efficient analysis of large-scale genome-wide data with two R packages: bigstatsr and bigsnpr. Bioinformatics. doi:10.1093/bioinformatics/bty185. [accessed 2018 May 29]. https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/bty185/4956666.
Raimondi C, Jagla B, Proux C, Waxin H, Gangloff S, Arcangioli B. 2018. Molecular signature of the imprintosome complex at the mating-type locus in fission yeast. Microbial Cell. 5:169–183. doi:10.15698/mic2018.04.623.
Randrianjatovo-Gbalou I, Rosario S, Sismeiro O, Varet H, Legendre R, Coppée J-Y, Huteau V, Pochet S, Delarue M. 2018 May 21. Enzymatic synthesis of random sequences of RNA and RNA analogues by DNA polymerase theta mutants for the generation of aptamer libraries. Nucleic Acids Research. doi:10.1093/nar/gky413. [accessed 2018 May 29]. https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gky413/5000021.
Rochat T, Bohn C, Morvan C, Le Lam TN, Razvi F, Pain A, Toffano-Nioche C, Ponien P, Jacq A, Jacquet E, Fey PD, Gautheret D, Bouloc P. 2018 Jul 9. The conserved regulatory RNA RsaE down-regulates the arginine degradation pathway in Staphylococcus aureus. Nucleic Acids Research. doi:10.1093/nar/gky584. [accessed 2018 Jul 11]. https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gky584/5050623.
Ropars J, Maufrais C, Diogo D, Marcet-Houben M, Perin A, Sertour N, Mosca K, Permal E, Laval G, Bouchier C, Ma L, Schwartz K, Voelz K, May RC, Poulain J, Battail C, Wincker P, Borman AM, Chowdhary A, Fan S, Kim SH, Le Pape P, Romeo O, Shin JH, Gabaldon T, Sherlock G, Bougnoux M-E, d’Enfert C. 2018. Gene flow contributes to diversification of the major fungal pathogen Candida albicans. Nat Commun. 9:2253. doi:10.1038/s41467-018-04787-4.
Salje H, Cummings DAT, Rodriguez-Barraquer I, Katzelnick LC, Lessler J, Klungthong C, Thaisomboonsuk B, Nisalak A, Weg A, Ellison D, Macareo L, Yoon I-K, Jarman R, Thomas S, Rothman AL, Endy T, Cauchemez S. 2018. Reconstruction of antibody dynamics and infection histories to evaluate dengue risk. Nature. 557:719–723. doi:10.1038/s41586-018-0157-4.
Sung YJ, Winkler TW, de Las Fuentes L, Bentley AR, Brown MR, Kraja AT, Schwander K, Ntalla I, Guo X, Franceschini N, Lu Y, Cheng C-Y, Sim X, Vojinovic D, Marten J, Musani SK, Li C, Feitosa MF, Kilpeläinen TO, Richard MA, Noordam R, Aslibekyan S, Aschard H, Bartz TM, Dorajoo R, Liu Y, Manning AK, Rankinen T, Smith AV, Tajuddin SM, Tayo BO, Warren HR, Zhao W, Zhou Y, Matoba N, Sofer T, Alver M, Amini M, Boissel M, Chai JF, Chen X, Divers J, Gandin I, Gao C, Giulianini F, Goel A, Harris SE, Hartwig FP, Horimoto ARVR, Hsu F-C, Jackson AU, Kähönen M, Kasturiratne A, Kühnel B, Leander K, Lee W-J, Lin K-H, ’an Luan J, McKenzie CA, Meian H, Nelson CP, Rauramaa R, Schupf N, Scott RA, Sheu WHH, Stančáková A, Takeuchi F, van der Most PJ, Varga TV, Wang H, Wang Y, Ware EB, Weiss S, Wen W, Yanek LR, Zhang W, Zhao JH, Afaq S, Alfred T, Amin N, Arking D, Aung T, Barr RG, Bielak LF, Boerwinkle E, Bottinger EP, Braund PS, Brody JA, Broeckel U, Cabrera CP, Cade B, Caizheng Y, Campbell A, Canouil M, Chakravarti A, CHARGE Neurology Working Group, Chauhan G, Christensen K, Cocca M, COGENT-Kidney Consortium, et al. 2018. A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure. Am J Hum Genet. 102:375–400. doi:10.1016/j.ajhg.2018.01.015.
Varet H, Shaulov Y, Sismeiro O, Trebicz-Geffen M, Legendre R, Coppée J-Y, Ankri S, Guillen N. 2018. Enteric bacteria boost defences against oxidative stress in Entamoeba histolytica. Sci Rep. 8:9042. doi:10.1038/s41598-018-27086-w.
Vestergaard CL, Blainey PC, Flyvbjerg H. 2018. Single-particle trajectories reveal two-state diffusion-kinetics of hOGG1 proteins on DNA. Nucleic Acids Research. 46:2446–2458. doi:10.1093/nar/gky004.
Wang Y, Gao X, Ghozlane A, Hu H, Li X, Xiao Y, Li D, Yu G, Zhang T. 2018. Characteristics of Faecal Microbiota in Paediatric Crohn’s Disease and Their Dynamic Changes During Infliximab Therapy. J Crohns Colitis. 12:337–346. doi:10.1093/ecco-jcc/jjx153.
Zimmer C, Fabre E. 2018 Jun 8. Chromatin mobility upon DNA damage: state of the art and remaining questions. Curr Genet. doi:10.1007/s00294-018-0852-6.
Ziyatdinov A, Vázquez-Santiago M, Brunel H, Martinez-Perez A, Aschard H, Soria JM. 2018. lme4qtl: linear mixed models with flexible covariance structure for genetic studies of related individuals. BMC Bioinformatics. 19. doi:10.1186/s12859-018-2057-x. [accessed 2018 May 29]. https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2057-x.