C3BI News – JOBIM 2015

Most of HUB Team members are attending to JOBIM conference this week.

Upcoming Events : C3BI News – JOBIM 2015 – Clermont Ferrand

Date : From Monday 6th July 2015 to Thursday 9th July 2015 Location : Polydome – Clermont-Ferrand

JOBIM 2015

Most of HUB Team members are attending to JOBIM conference this week. You can have a look to our poster n°116 PosterHubC3BI

C3BI

C3BI Meeting – Seminar – Large audience – SRTS2, Short Read Sequence Typing for Bacterial Pathogens

Upcoming Events : Seminar – Large audience 05/12/2015 at 03:00 pm at Retrovirus room – LWOFF (22)

Date : 05/12/2015 at 03:00 pm Location : Retrovirus room – LWOFF (22) Speakers : Kathryn E. HOLT For any questions, suggestions (or to volunteer) for future talks or general feedback please contact us at bioinfo-hub@pasteur.fr

SRST2, Short Read Sequence Typing for Bacterial Pathogens

Kathryn E. HOLT will present SRST2 program, designed to take sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, etc) and report the presence of STs and/or reference genes. For more information, see: Inouye et al, 2014. SRST2: Rapid genomic surveillance for public health and hospital microbiology labs, available at http://genomemedicine.com/content/6/11/90 Please join us and share your experience, views and thoughts on the talk.

 C3BI

C3BI Team – !hacking@pasteur

Upcoming Events : !hacking@pasteur Thursday MAY 7th at 3.00PM at room Retrovirus in building LWOFF

Date : Thursday May 7th at 3.00PM Location : room Retrovirus in building LWOFF Speakers : Vincent ROUILLY For any questions, suggestions (or to volunteer) for future talks or general feedback please contact us at hacking-adm@pasteur.fr

Hands-on session on the R Shiny Framework

Vincent ROUILLY will present on his experience with the R web application framework “Shiny”. If you have always struggled to provide friendly interfaces to your super-smart R scripts, there is a Shiny light at the end of the tunnel. Shiny, provided by RStudio, is a web application framework for R. It can turn your analyses into interactive web applications. No HTML, CSS, or Javascript knowledge is required. During this session, we will introduce the basic features and architecture of a Shiny App, and we will go through all the necessary steps involved in deploying a simple Shiny App. Shiny Project websitehttp://shiny.rstudio.com/ Gallery of Shiny applications: http://www.showmeshiny.com/ To make the session more interactive, bring your laptop with you with the latest R and Rstudio pre-installed + installed packages (ggplot2, shiny) Please join us and share your experience, views and thoughts on the talk and coding in general. We want this meeting to have an interactive and lively atmosphere with many debates on what is considered the “best” way.

C3BI

C3BI Team – !hacking@pasteur

Upcoming Events : !hacking@pasteur Thursday April 9th at 3.00PM at room Retrovirus in building LWOFF

Date : Thursday April 9th at 3.00PM Location : room Retrovirus in building LWOFF Speakers : Emmanuel QUEVILLON For any questions, suggestions (or to volunteer) for future talks or general feedback please contact us at hacking-adm@pasteur.fr

Django, a python web framework

Emmanuel QUEVILLON will present on his experience with Django (https://www.djangoproject.com/), an excellent python tool for rapid web development used by many large scientific (and other) organizations around the world. Emmanuel will build a simple web application to demonstrate the power of Django and will then use his production demultng application to exhibit some other interesting things that can be done with Django.

Please join us and share your experience, views and thoughts on the talk and coding in general. We want this meeting to have an interactive and lively atmosphere with many debates on what is considered the “best” way.

C3BI